Zinc in PDB 3k6d: Crystal Structure of Xenopus Laevis T-Cadherin EC1

The structure of Crystal Structure of Xenopus Laevis T-Cadherin EC1, PDB code: 3k6d was solved by L.Shapiro, C.Ciatto, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	27.90 / 1.80
Space group	I 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	78.910, 78.910, 62.577, 90.00, 90.00, 90.00
R / Rfree (%)	22.7 / 28.5

The binding sites of Zinc atom in the Crystal Structure of Xenopus Laevis T-Cadherin EC1 (pdb code 3k6d). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Xenopus Laevis T-Cadherin EC1, PDB code: 3k6d:

Zinc binding site 1 out of 1 in the Crystal Structure of Xenopus Laevis T-Cadherin EC1


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Xenopus Laevis T-Cadherin EC1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:24.9 occ:0.50 OD1 A:ASP99 2.3 15.4 1.0 OXT A:ASP99 2.4 16.9 1.0 OE2 A:GLU11 2.4 16.1 1.0 C A:ASP99 3.3 17.0 1.0 CG A:ASP99 3.4 19.8 1.0 CD A:GLU11 3.4 18.2 1.0 CA A:ASP99 3.8 18.7 1.0 CG A:GLU11 3.8 14.8 1.0 CB A:ASP99 4.0 19.3 1.0 O A:HOH193 4.0 31.7 1.0 O A:HOH173 4.2 26.4 0.5 O A:ASP99 4.3 17.1 1.0 OD2 A:ASP99 4.4 17.1 1.0 OE1 A:GLU11 4.5 18.5 1.0 ND2 A:ASN12 4.7 17.8 1.0

C.Ciatto, F.Bahna, N.Zampieri, H.C.Vansteenhouse, P.S.Katsamba, G.Ahlsen, O.J.Harrison, J.Brasch, X.Jin, S.Posy, J.Vendome, B.Ranscht, T.M.Jessell, B.Honig, L.Shapiro. T-Cadherin Structures Reveal A Novel Adhesive Binding Mechanism Nat.Struct.Mol.Biol. V. 17 339 2010.
ISSN: ISSN 1545-9993
PubMed: 20190755
DOI: 10.1038/NSMB.1781