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Zinc in PDB 3k1l: Crystal Structure of Fancl

Enzymatic activity of Crystal Structure of Fancl

All present enzymatic activity of Crystal Structure of Fancl:
6.3.2.19;

Protein crystallography data

The structure of Crystal Structure of Fancl, PDB code: 3k1l was solved by A.R.Cole, H.Walden, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 77.93 / 3.20
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 188.680, 188.680, 259.360, 90.00, 90.00, 120.00
R / Rfree (%) 20.5 / 24.7

Other elements in 3k1l:

The structure of Crystal Structure of Fancl also contains other interesting chemical elements:

Gold (Au) 13 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Fancl (pdb code 3k1l). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of Fancl, PDB code: 3k1l:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 3k1l

Go back to Zinc Binding Sites List in 3k1l
Zinc binding site 1 out of 4 in the Crystal Structure of Fancl


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Fancl within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn382

b:0.7
occ:1.00
SG B:CYS364 2.0 74.7 1.0
SG B:CYS367 2.3 0.6 1.0
SG B:CYS334 2.3 89.1 1.0
SG B:CYS329 2.5 86.9 1.0
CB B:CYS334 2.8 99.1 1.0
CB B:CYS367 3.0 0.2 1.0
CB B:CYS364 3.1 79.2 1.0
N B:CYS367 3.2 91.8 1.0
CA B:CYS367 3.6 0.5 1.0
CB B:CYS329 4.0 82.9 1.0
CB B:PHE366 4.0 0.3 1.0
C B:PHE366 4.1 0.7 1.0
CA B:CYS334 4.3 0.3 1.0
C B:CYS367 4.4 0.9 1.0
CA B:PHE366 4.5 93.3 1.0
N B:LYS368 4.5 84.6 1.0
CA B:CYS364 4.5 0.0 1.0
CB B:ASN331 4.5 81.5 1.0
N B:PHE366 4.6 95.6 1.0
CB B:ALA369 4.6 0.6 1.0
ND2 B:ASN331 4.7 89.0 1.0
N B:ALA369 4.7 79.3 1.0
C B:CYS364 4.9 0.3 1.0
O B:CYS364 4.9 0.1 1.0
CG B:ASN331 5.0 81.3 1.0
O B:CYS334 5.0 99.3 1.0

Zinc binding site 2 out of 4 in 3k1l

Go back to Zinc Binding Sites List in 3k1l
Zinc binding site 2 out of 4 in the Crystal Structure of Fancl


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Fancl within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn383

b:0.7
occ:1.00
ND1 B:HIS339 1.8 0.7 1.0
SG B:CYS342 2.0 63.0 1.0
SG B:CYS314 2.0 61.3 1.0
CG B:HIS339 2.4 0.1 1.0
SG B:CYS311 2.5 68.4 1.0
CB B:HIS339 2.5 0.0 1.0
CE1 B:HIS339 3.0 0.9 1.0
CB B:CYS342 3.3 62.2 1.0
CB B:CYS311 3.4 73.0 1.0
CD2 B:HIS339 3.7 0.1 1.0
CA B:HIS339 3.7 66.3 1.0
N B:HIS339 3.8 75.2 1.0
CB B:CYS314 3.8 61.9 1.0
NE2 B:HIS339 3.9 0.6 1.0
CD1 B:LEU319 4.1 64.8 1.0
CD2 B:LEU319 4.1 62.2 1.0
CG B:LEU319 4.4 62.0 1.0
CA B:CYS311 4.5 0.5 1.0
CA B:CYS342 4.5 70.6 1.0
N B:CYS342 4.6 68.4 1.0
C B:HIS339 4.6 66.3 1.0
O B:HIS339 4.7 68.3 1.0
N B:CYS314 4.7 92.1 1.0
CA B:CYS314 4.9 84.6 1.0

Zinc binding site 3 out of 4 in 3k1l

Go back to Zinc Binding Sites List in 3k1l
Zinc binding site 3 out of 4 in the Crystal Structure of Fancl


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Fancl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn382

b:0.7
occ:1.00
SG A:CYS367 1.9 89.5 1.0
SG A:CYS364 2.0 64.9 1.0
SG A:CYS334 2.1 69.3 1.0
SG A:CYS329 2.2 74.7 1.0
CB A:CYS364 2.8 67.8 1.0
CB A:CYS367 3.0 84.2 1.0
N A:CYS367 3.3 69.0 1.0
CB A:CYS334 3.3 80.7 1.0
CB A:CYS329 3.5 68.5 1.0
CA A:CYS367 3.6 74.1 1.0
CB A:ASN331 4.1 0.2 1.0
C A:CYS367 4.1 71.8 1.0
CA A:CYS364 4.2 73.4 1.0
N A:LYS368 4.3 0.4 1.0
C A:PHE366 4.3 89.0 1.0
ND2 A:ASN331 4.4 0.4 1.0
N A:ALA369 4.5 0.0 1.0
CB A:PHE366 4.5 0.4 1.0
CB A:ALA369 4.6 72.2 1.0
CA A:CYS334 4.6 87.1 1.0
C A:CYS364 4.7 75.4 1.0
N A:PHE366 4.7 74.7 1.0
CG A:ASN331 4.7 0.2 1.0
CA A:PHE366 4.7 74.6 1.0
O A:CYS364 4.8 89.7 1.0
O A:CYS367 4.9 78.7 1.0
CA A:CYS329 4.9 78.3 1.0

Zinc binding site 4 out of 4 in 3k1l

Go back to Zinc Binding Sites List in 3k1l
Zinc binding site 4 out of 4 in the Crystal Structure of Fancl


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Fancl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn383

b:0.7
occ:1.00
ND1 A:HIS339 1.7 88.9 1.0
SG A:CYS311 1.9 56.1 1.0
SG A:CYS314 2.2 55.4 1.0
CG A:HIS339 2.4 91.0 1.0
CB A:CYS311 2.6 61.1 1.0
SG A:CYS342 2.6 63.8 1.0
CB A:HIS339 2.7 91.4 1.0
CE1 A:HIS339 2.8 89.9 1.0
N A:HIS339 3.4 82.4 1.0
CA A:CYS311 3.5 0.7 1.0
CD2 A:HIS339 3.6 93.8 1.0
CA A:HIS339 3.6 74.8 1.0
NE2 A:HIS339 3.7 92.8 1.0
CB A:CYS342 3.8 68.3 1.0
CB A:CYS314 3.9 54.4 1.0
N A:CYS311 4.3 0.1 1.0
O A:ALA316 4.4 71.1 1.0
CD2 A:LEU319 4.5 56.0 1.0
N A:CYS314 4.6 98.2 1.0
C A:CYS338 4.6 74.4 1.0
C A:HIS339 4.7 74.2 1.0
CD1 A:LEU319 4.7 60.3 1.0
C A:CYS311 4.8 0.3 1.0
O A:HIS339 4.8 74.1 1.0
CA A:CYS314 4.8 91.4 1.0
CG A:LEU319 4.9 59.0 1.0
N A:ASN312 4.9 88.5 1.0

Reference:

A.R.Cole, L.P.C.Lewis, H.Walden. The Structure of the Catalytic Subunit Fancl of the Fanconi Anemia Core Complex Nat.Struct.Mol.Biol. V. 17 294 2010.
ISSN: ISSN 1545-9993
PubMed: 20154706
DOI: 10.1038/NSMB.1759
Page generated: Wed Dec 16 04:29:21 2020

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