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Zinc in PDB 3j80: Cryoem Structure of 40S-EIF1-EIF1A Preinitiation Complex

Other elements in 3j80:

The structure of Cryoem Structure of 40S-EIF1-EIF1A Preinitiation Complex also contains other interesting chemical elements:

Magnesium (Mg) 67 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Cryoem Structure of 40S-EIF1-EIF1A Preinitiation Complex (pdb code 3j80). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Cryoem Structure of 40S-EIF1-EIF1A Preinitiation Complex, PDB code: 3j80:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in 3j80

Go back to Zinc Binding Sites List in 3j80
Zinc binding site 1 out of 3 in the Cryoem Structure of 40S-EIF1-EIF1A Preinitiation Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryoem Structure of 40S-EIF1-EIF1A Preinitiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Zn500

b:0.0
occ:1.00
SG a:CYS74 1.9 0.8 1.0
SG a:CYS77 2.3 0.0 1.0
SG a:CYS23 2.7 0.2 1.0
CB a:CYS26 3.0 0.8 1.0
CB a:CYS77 3.0 0.9 1.0
CB a:CYS74 3.2 92.6 1.0
O a:CYS74 3.5 81.0 1.0
SG a:CYS26 3.6 0.4 1.0
N a:CYS26 3.6 0.6 1.0
CB a:CYS23 3.7 98.0 1.0
N a:CYS74 3.7 89.0 1.0
CA a:CYS74 3.9 86.8 1.0
CA a:CYS26 3.9 0.8 1.0
C a:CYS74 4.1 84.2 1.0
N a:CYS77 4.1 87.8 1.0
CA a:CYS77 4.2 91.4 1.0
OG a:SER76 4.4 97.4 1.0
CB a:ASN25 4.6 0.8 1.0
C a:ASN25 4.8 0.2 1.0
C a:TYR73 4.8 92.6 1.0
C a:CYS26 5.0 0.8 1.0
N a:ASN25 5.0 97.5 1.0

Zinc binding site 2 out of 3 in 3j80

Go back to Zinc Binding Sites List in 3j80
Zinc binding site 2 out of 3 in the Cryoem Structure of 40S-EIF1-EIF1A Preinitiation Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Cryoem Structure of 40S-EIF1-EIF1A Preinitiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
b:Zn101

b:0.7
occ:1.00
N b:CYS37 2.7 0.1 1.0
O b:ASN42 3.1 0.8 1.0
O b:VAL35 3.2 0.3 1.0
C b:LYS36 3.2 1.0 1.0
CB b:CYS37 3.2 0.2 1.0
SG b:CYS37 3.3 0.9 1.0
CA b:LYS36 3.3 0.1 1.0
CA b:CYS37 3.5 0.0 1.0
OG1 b:THR44 3.7 0.9 1.0
SG b:CYS56 3.8 0.1 1.0
C b:VAL35 3.8 0.9 1.0
CD2 b:LEU63 3.9 0.7 1.0
N b:LYS36 3.9 0.7 1.0
O b:LYS36 4.1 0.3 1.0
C b:ASN42 4.2 0.2 1.0
N b:THR44 4.6 0.6 1.0
CB b:LYS36 4.6 0.3 1.0
CA b:ILE43 4.7 0.2 1.0
C b:CYS37 4.8 0.4 1.0
CG b:LEU63 4.9 0.2 1.0
N b:ILE43 4.9 0.2 1.0
CD1 b:LEU63 4.9 0.5 1.0
C b:ILE43 5.0 0.7 1.0

Zinc binding site 3 out of 3 in 3j80

Go back to Zinc Binding Sites List in 3j80
Zinc binding site 3 out of 3 in the Cryoem Structure of 40S-EIF1-EIF1A Preinitiation Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Cryoem Structure of 40S-EIF1-EIF1A Preinitiation Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
f:Zn501

b:0.7
occ:1.00
SG f:CYS142 3.0 0.8 1.0
SG f:CYS121 3.0 0.5 1.0
CB f:CYS142 3.2 0.3 1.0
N f:CYS142 3.4 0.8 1.0
CB f:CYS139 3.6 0.8 1.0
CA f:CYS142 3.9 0.4 1.0
CB f:CYS124 4.1 0.4 1.0
CB f:CYS121 4.1 0.5 1.0
CD1 f:ILE128 4.2 0.7 1.0
CB f:LYS141 4.2 0.5 1.0
SG f:CYS124 4.2 0.0 1.0
C f:LYS141 4.3 0.9 1.0
N f:CYS124 4.4 0.8 1.0
SG f:CYS139 4.5 0.4 1.0
CA f:LYS141 4.6 0.5 1.0
CG2 f:ILE128 4.6 0.2 1.0
N f:LYS141 4.6 0.5 1.0
CB f:ASN123 4.6 0.1 1.0
CA f:CYS124 4.8 0.5 1.0
CA f:CYS139 4.9 0.0 1.0
C f:CYS139 4.9 0.4 1.0

Reference:

T.Hussain, J.L.Llacer, I.S.Fernandez, A.Munoz, P.Martin-Marcos, C.G.Savva, J.R.Lorsch, A.G.Hinnebusch, V.Ramakrishnan. Structural Changes Enable Start Codon Recognition By the Eukaryotic Translation Initiation Complex Cell(Cambridge,Mass.) V. 159 597 2014.
ISSN: ISSN 0092-8674
DOI: 10.1016/J.CELL.2014.10.001
Page generated: Wed Dec 16 04:27:32 2020

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