Zinc in PDB 3j7a: Cryo-Em Structure of the Plasmodium Falciparum 80S Ribosome Bound to the Anti-Protozoan Drug Emetine, Small Subunit

The structure of Cryo-Em Structure of the Plasmodium Falciparum 80S Ribosome Bound to the Anti-Protozoan Drug Emetine, Small Subunit also contains other interesting chemical elements:

Magnesium

(Mg)

67 atoms

The binding sites of Zinc atom in the Cryo-Em Structure of the Plasmodium Falciparum 80S Ribosome Bound to the Anti-Protozoan Drug Emetine, Small Subunit (pdb code 3j7a). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Cryo-Em Structure of the Plasmodium Falciparum 80S Ribosome Bound to the Anti-Protozoan Drug Emetine, Small Subunit, PDB code: 3j7a:

Zinc binding site 1 out of 1 in the Cryo-Em Structure of the Plasmodium Falciparum 80S Ribosome Bound to the Anti-Protozoan Drug Emetine, Small Subunit


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Cryo-Em Structure of the Plasmodium Falciparum 80S Ribosome Bound to the Anti-Protozoan Drug Emetine, Small Subunit within 5.0Å range: probe atom residue distance (Å) B Occ T:Zn100 b:1.0 occ:1.00 SG T:CYS40 2.5 0.9 1.0 SG T:CYS37 2.6 0.8 1.0 SG T:CYS22 2.7 0.4 1.0 OD1 T:ASN24 2.9 0.7 1.0 SG T:CYS19 2.9 0.1 1.0 CB T:CYS22 3.0 0.2 1.0 N T:CYS22 3.4 0.1 1.0 CB T:CYS19 3.7 0.3 1.0 CA T:CYS22 3.7 0.7 1.0 CB T:CYS40 3.9 0.5 1.0 CG T:ASN24 3.9 0.0 1.0 CB T:VAL21 4.1 0.7 1.0 CB T:CYS37 4.1 0.2 1.0 O2' A:G1679 4.3 0.8 1.0 C T:CYS22 4.4 0.4 1.0 C T:VAL21 4.4 0.0 1.0 N T:CYS37 4.6 0.7 1.0 CB T:ASN24 4.7 0.7 1.0 CA T:VAL21 4.7 0.7 1.0 ND2 T:ASN24 4.8 0.3 1.0 N3 A:G1679 4.8 0.5 1.0 O T:CYS37 4.8 0.1 1.0 CA T:CYS37 4.9 0.9 1.0 N T:SER23 4.9 0.9 1.0 CG1 T:VAL21 4.9 0.0 1.0 CG2 T:VAL21 4.9 0.3 1.0 O4' A:U1680 5.0 0.6 1.0 O T:CYS22 5.0 0.9 1.0 N T:VAL21 5.0 0.1 1.0

W.Wong, X.C.Bai, A.Brown, I.S.Fernandez, E.Hanssen, M.Condron, Y.H.Tan, J.Baum, S.H.Scheres. Cryo-Em Structure of the Plasmodium Falciparum 80S Ribosome Bound to the Anti-Protozoan Drug Emetine. Elife 03080 2014.
ISSN: ESSN 2050-084X
PubMed: 24913268
DOI: 10.7554/ELIFE.03080