Zinc in PDB 3iuf: Crystal Structure of the C2H2-Type Zinc Finger Domain of Human Ubi-D4

The structure of Crystal Structure of the C2H2-Type Zinc Finger Domain of Human Ubi-D4, PDB code: 3iuf was solved by W.Tempel, C.Xu, C.Bian, M.Adams-Cioaba, J.Eryilmaz, C.Bountra, J.Weigelt, C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, J.Min, Structural Genomicsconsortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	22.72 / 1.80
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	24.714, 57.657, 22.585, 90.00, 90.00, 90.00
R / Rfree (%)	19.3 / 23.7

The binding sites of Zinc atom in the Crystal Structure of the C2H2-Type Zinc Finger Domain of Human Ubi-D4 (pdb code 3iuf). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the C2H2-Type Zinc Finger Domain of Human Ubi-D4, PDB code: 3iuf:

Zinc binding site 1 out of 1 in the Crystal Structure of the C2H2-Type Zinc Finger Domain of Human Ubi-D4


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the C2H2-Type Zinc Finger Domain of Human Ubi-D4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1 b:16.1 occ:1.00 NE2 A:HIS227 2.0 15.4 1.0 NE2 A:HIS232 2.1 14.3 1.0 SG A:CYS211 2.3 15.5 1.0 SG A:CYS214 2.3 16.5 1.0 CE1 A:HIS227 3.0 17.3 1.0 CD2 A:HIS232 3.0 12.3 1.0 CD2 A:HIS227 3.1 14.5 1.0 CE1 A:HIS232 3.1 16.5 1.0 CB A:CYS211 3.1 14.9 1.0 CB A:CYS214 3.4 16.2 1.0 N A:CYS214 3.7 16.1 1.0 CA A:CYS214 4.1 17.1 1.0 ND1 A:HIS227 4.1 19.4 1.0 ND1 A:HIS232 4.2 15.7 1.0 CG A:HIS227 4.2 17.0 1.0 CG A:HIS232 4.2 15.0 1.0 CB A:SER231 4.5 17.8 1.0 CA A:CYS211 4.6 14.9 1.0 CB A:ILE213 4.6 15.2 1.0 C A:ILE213 4.7 16.5 1.0 C A:CYS214 4.8 17.7 1.0 N A:ILE213 4.9 15.9 1.0 N A:GLY215 4.9 17.6 1.0 CB A:LYS216 4.9 18.4 1.0 CA A:ILE213 5.0 15.9 1.0

W.Zhang, C.Xu, C.Bian, W.Tempel, L.Crombet, F.Mackenzie, J.Min, Z.Liu, C.Qi. Crystal Structure of the CYS2HIS2-Type Zinc Finger Domain of Human DPF2. Biochem.Biophys.Res.Commun. V. 413 58 2011.
ISSN: ISSN 0006-291X
PubMed: 21888896
DOI: 10.1016/J.BBRC.2011.08.043