Zinc in PDB 3iot: Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B

The structure of Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B, PDB code: 3iot was solved by M.W.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.36 / 3.50
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	163.250, 101.360, 137.030, 90.00, 91.83, 90.00
R / Rfree (%)	24.7 / 29.5

The structure of Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B also contains other interesting chemical elements:

Calcium

(Ca)

9 atoms

The binding sites of Zinc atom in the Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B (pdb code 3iot). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 9 binding sites of Zinc where determined in the Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B, PDB code: 3iot:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Zinc binding site 1 out of 9 in the Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:76.4 occ:1.00 O A:HIS39 2.6 55.3 1.0 ND1 A:HIS39 2.6 55.2 1.0 CE1 A:HIS39 2.9 55.5 1.0 CG A:HIS39 3.6 55.2 1.0 C A:HIS39 3.8 55.3 1.0 NE2 A:HIS39 3.9 55.5 1.0 CD2 A:HIS39 4.2 55.3 1.0 CB A:HIS39 4.3 55.2 1.0 CA A:HIS39 4.7 55.2 1.0 CA A:PRO40 4.7 55.3 1.0 N A:PRO40 4.7 55.3 1.0 C A:PRO40 4.8 55.3 1.0 CA A:GLY13 4.8 55.2 1.0 N A:ASP41 4.9 55.4 1.0

Zinc binding site 2 out of 9 in the Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn502 b:99.0 occ:1.00 OE1 A:GLU138 2.7 55.3 1.0 CD A:GLU138 3.6 55.4 1.0 OE2 A:GLU138 3.8 55.5 1.0 CG A:GLU138 4.9 55.4 1.0

Zinc binding site 3 out of 9 in the Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn503 b:98.9 occ:1.00 CE1 A:HIS203 3.1 55.3 1.0 OD1 A:ASN201 3.5 55.4 1.0 NE2 A:HIS203 3.5 55.3 1.0 CG A:ASN201 3.7 55.4 1.0 CB A:ASN201 4.1 55.3 1.0 ND2 A:ASN201 4.2 55.4 1.0 ND1 A:HIS203 4.3 55.3 1.0 CB A:PRO133 4.7 55.3 1.0 CD2 A:HIS203 4.9 55.3 1.0

Zinc binding site 4 out of 9 in the Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn501 b:98.0 occ:1.00 CE1 B:HIS203 2.7 55.3 1.0 NE2 B:HIS203 3.1 55.3 1.0 OD1 B:ASN201 3.8 55.5 1.0 ND1 B:HIS203 4.0 55.4 1.0 CB B:PRO133 4.0 55.3 1.0 CG B:ASN201 4.1 55.4 1.0 CB B:ASN201 4.4 55.3 1.0 CD2 B:HIS203 4.4 55.3 1.0 O B:PRO133 4.7 55.4 1.0 CA B:PRO133 4.7 55.3 1.0 ND2 B:ASN201 4.8 55.4 1.0 C B:PRO133 4.9 55.4 1.0 CG B:HIS203 4.9 55.3 1.0

Zinc binding site 5 out of 9 in the Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn502 b:78.7 occ:1.00 OE1 B:GLU291 2.7 55.4 1.0 CD B:GLU291 3.6 55.4 1.0 OE2 B:GLU291 3.7 55.3 1.0 OE2 B:GLU288 3.8 55.3 1.0 OE1 B:GLU288 4.0 55.5 1.0 CD B:GLU288 4.1 55.5 1.0 OE1 B:GLU310 4.3 55.4 1.0

Zinc binding site 6 out of 9 in the Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn503 b:0.1 occ:1.00 O B:HIS39 2.4 55.6 1.0 ND1 B:HIS39 2.9 55.3 1.0 C B:HIS39 3.5 55.5 1.0 CB B:HIS39 3.6 55.4 1.0 CG B:HIS39 3.6 55.3 1.0 CA B:GLY13 3.9 55.1 1.0 CE1 B:HIS39 3.9 55.3 1.0 N B:GLY13 4.1 55.1 1.0 CA B:HIS39 4.2 55.4 1.0 C B:PRO40 4.5 55.2 1.0 N B:PRO40 4.5 55.3 1.0 O B:PRO40 4.6 55.2 1.0 CA B:PRO40 4.7 55.2 1.0 N B:ASP41 4.8 55.3 1.0 CD2 B:HIS39 4.9 55.1 1.0 NE2 B:HIS39 5.0 55.4 1.0

Zinc binding site 7 out of 9 in the Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn501 b:0.4 occ:1.00 OE1 C:GLU291 2.8 55.4 1.0 OE1 C:GLU310 3.6 55.5 1.0 CD C:GLU291 3.8 55.4 1.0 OE2 C:GLU291 4.1 55.3 1.0 OE2 C:GLU288 4.1 55.3 1.0 OE2 C:GLU310 4.4 55.5 1.0 CD C:GLU310 4.5 55.5 1.0 OE1 C:GLU288 4.5 55.5 1.0 CD C:GLU288 4.7 55.5 1.0

Zinc binding site 8 out of 9 in the Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn502 b:0.3 occ:1.00 CE1 C:HIS203 2.9 55.3 1.0 OD1 C:ASN201 3.2 55.4 1.0 NE2 C:HIS203 3.6 55.3 1.0 CG C:ASN201 3.6 55.4 1.0 ND1 C:HIS203 4.1 55.4 1.0 CB C:ASN201 4.1 55.3 1.0 CB C:PRO133 4.1 55.3 1.0 ND2 C:ASN201 4.3 55.4 1.0 CD2 C:HIS203 4.9 55.2 1.0

Zinc binding site 9 out of 9 in the Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn503 b:0.9 occ:1.00 ND1 C:HIS39 2.5 55.6 1.0 O C:HIS39 2.9 55.2 1.0 CE1 C:HIS39 2.9 55.6 1.0 CG C:HIS39 3.6 55.5 1.0 NE2 C:HIS39 4.0 55.7 1.0 C C:HIS39 4.1 55.3 1.0 CB C:HIS39 4.2 55.4 1.0 CD2 C:HIS39 4.4 55.7 1.0 CA C:HIS39 4.7 55.3 1.0

M.W.Kim, Y.Chelliah, S.W.Kim, Z.Otwinowski, I.Bezprozvanny. Secondary Structure of Huntingtin Amino-Terminal Region. Structure V. 17 1205 2009.
ISSN: ISSN 0969-2126
PubMed: 19748341
DOI: 10.1016/J.STR.2009.08.002