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Zinc in PDB 3iot: Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B

Protein crystallography data

The structure of Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B, PDB code: 3iot was solved by M.W.Kim, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.36 / 3.50
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 163.250, 101.360, 137.030, 90.00, 91.83, 90.00
R / Rfree (%) 24.7 / 29.5

Other elements in 3iot:

The structure of Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B also contains other interesting chemical elements:

Calcium (Ca) 9 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B (pdb code 3iot). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 9 binding sites of Zinc where determined in the Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B, PDB code: 3iot:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Zinc binding site 1 out of 9 in 3iot

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Zinc binding site 1 out of 9 in the Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:76.4
occ:1.00
O A:HIS39 2.6 55.3 1.0
ND1 A:HIS39 2.6 55.2 1.0
CE1 A:HIS39 2.9 55.5 1.0
CG A:HIS39 3.6 55.2 1.0
C A:HIS39 3.8 55.3 1.0
NE2 A:HIS39 3.9 55.5 1.0
CD2 A:HIS39 4.2 55.3 1.0
CB A:HIS39 4.3 55.2 1.0
CA A:HIS39 4.7 55.2 1.0
CA A:PRO40 4.7 55.3 1.0
N A:PRO40 4.7 55.3 1.0
C A:PRO40 4.8 55.3 1.0
CA A:GLY13 4.8 55.2 1.0
N A:ASP41 4.9 55.4 1.0

Zinc binding site 2 out of 9 in 3iot

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Zinc binding site 2 out of 9 in the Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn502

b:99.0
occ:1.00
OE1 A:GLU138 2.7 55.3 1.0
CD A:GLU138 3.6 55.4 1.0
OE2 A:GLU138 3.8 55.5 1.0
CG A:GLU138 4.9 55.4 1.0

Zinc binding site 3 out of 9 in 3iot

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Zinc binding site 3 out of 9 in the Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn503

b:98.9
occ:1.00
CE1 A:HIS203 3.1 55.3 1.0
OD1 A:ASN201 3.5 55.4 1.0
NE2 A:HIS203 3.5 55.3 1.0
CG A:ASN201 3.7 55.4 1.0
CB A:ASN201 4.1 55.3 1.0
ND2 A:ASN201 4.2 55.4 1.0
ND1 A:HIS203 4.3 55.3 1.0
CB A:PRO133 4.7 55.3 1.0
CD2 A:HIS203 4.9 55.3 1.0

Zinc binding site 4 out of 9 in 3iot

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Zinc binding site 4 out of 9 in the Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn501

b:98.0
occ:1.00
CE1 B:HIS203 2.7 55.3 1.0
NE2 B:HIS203 3.1 55.3 1.0
OD1 B:ASN201 3.8 55.5 1.0
ND1 B:HIS203 4.0 55.4 1.0
CB B:PRO133 4.0 55.3 1.0
CG B:ASN201 4.1 55.4 1.0
CB B:ASN201 4.4 55.3 1.0
CD2 B:HIS203 4.4 55.3 1.0
O B:PRO133 4.7 55.4 1.0
CA B:PRO133 4.7 55.3 1.0
ND2 B:ASN201 4.8 55.4 1.0
C B:PRO133 4.9 55.4 1.0
CG B:HIS203 4.9 55.3 1.0

Zinc binding site 5 out of 9 in 3iot

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Zinc binding site 5 out of 9 in the Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn502

b:78.7
occ:1.00
OE1 B:GLU291 2.7 55.4 1.0
CD B:GLU291 3.6 55.4 1.0
OE2 B:GLU291 3.7 55.3 1.0
OE2 B:GLU288 3.8 55.3 1.0
OE1 B:GLU288 4.0 55.5 1.0
CD B:GLU288 4.1 55.5 1.0
OE1 B:GLU310 4.3 55.4 1.0

Zinc binding site 6 out of 9 in 3iot

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Zinc binding site 6 out of 9 in the Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn503

b:0.1
occ:1.00
O B:HIS39 2.4 55.6 1.0
ND1 B:HIS39 2.9 55.3 1.0
C B:HIS39 3.5 55.5 1.0
CB B:HIS39 3.6 55.4 1.0
CG B:HIS39 3.6 55.3 1.0
CA B:GLY13 3.9 55.1 1.0
CE1 B:HIS39 3.9 55.3 1.0
N B:GLY13 4.1 55.1 1.0
CA B:HIS39 4.2 55.4 1.0
C B:PRO40 4.5 55.2 1.0
N B:PRO40 4.5 55.3 1.0
O B:PRO40 4.6 55.2 1.0
CA B:PRO40 4.7 55.2 1.0
N B:ASP41 4.8 55.3 1.0
CD2 B:HIS39 4.9 55.1 1.0
NE2 B:HIS39 5.0 55.4 1.0

Zinc binding site 7 out of 9 in 3iot

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Zinc binding site 7 out of 9 in the Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn501

b:0.4
occ:1.00
OE1 C:GLU291 2.8 55.4 1.0
OE1 C:GLU310 3.6 55.5 1.0
CD C:GLU291 3.8 55.4 1.0
OE2 C:GLU291 4.1 55.3 1.0
OE2 C:GLU288 4.1 55.3 1.0
OE2 C:GLU310 4.4 55.5 1.0
CD C:GLU310 4.5 55.5 1.0
OE1 C:GLU288 4.5 55.5 1.0
CD C:GLU288 4.7 55.5 1.0

Zinc binding site 8 out of 9 in 3iot

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Zinc binding site 8 out of 9 in the Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn502

b:0.3
occ:1.00
CE1 C:HIS203 2.9 55.3 1.0
OD1 C:ASN201 3.2 55.4 1.0
NE2 C:HIS203 3.6 55.3 1.0
CG C:ASN201 3.6 55.4 1.0
ND1 C:HIS203 4.1 55.4 1.0
CB C:ASN201 4.1 55.3 1.0
CB C:PRO133 4.1 55.3 1.0
ND2 C:ASN201 4.3 55.4 1.0
CD2 C:HIS203 4.9 55.2 1.0

Zinc binding site 9 out of 9 in 3iot

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Zinc binding site 9 out of 9 in the Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Huntingtin Amino-Terminal Region with 17 Gln Residues - Crystal C92-B within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn503

b:0.9
occ:1.00
ND1 C:HIS39 2.5 55.6 1.0
O C:HIS39 2.9 55.2 1.0
CE1 C:HIS39 2.9 55.6 1.0
CG C:HIS39 3.6 55.5 1.0
NE2 C:HIS39 4.0 55.7 1.0
C C:HIS39 4.1 55.3 1.0
CB C:HIS39 4.2 55.4 1.0
CD2 C:HIS39 4.4 55.7 1.0
CA C:HIS39 4.7 55.3 1.0

Reference:

M.W.Kim, Y.Chelliah, S.W.Kim, Z.Otwinowski, I.Bezprozvanny. Secondary Structure of Huntingtin Amino-Terminal Region. Structure V. 17 1205 2009.
ISSN: ISSN 0969-2126
PubMed: 19748341
DOI: 10.1016/J.STR.2009.08.002
Page generated: Wed Dec 16 04:26:46 2020

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