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Zinc in PDB 3ife: 1.55 Angstrom Resolution Crystal Structure of Peptidase T (Pept-1) From Bacillus Anthracis Str. 'Ames Ancestor'.

Enzymatic activity of 1.55 Angstrom Resolution Crystal Structure of Peptidase T (Pept-1) From Bacillus Anthracis Str. 'Ames Ancestor'.

All present enzymatic activity of 1.55 Angstrom Resolution Crystal Structure of Peptidase T (Pept-1) From Bacillus Anthracis Str. 'Ames Ancestor'.:
3.4.11.4;

Protein crystallography data

The structure of 1.55 Angstrom Resolution Crystal Structure of Peptidase T (Pept-1) From Bacillus Anthracis Str. 'Ames Ancestor'., PDB code: 3ife was solved by G.Minasov, A.Halavaty, L.Shuvalova, I.Dubrovska, J.Winsor, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.11 / 1.55
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 89.216, 142.739, 40.993, 90.00, 90.00, 90.00
R / Rfree (%) 14.8 / 17.2

Other elements in 3ife:

The structure of 1.55 Angstrom Resolution Crystal Structure of Peptidase T (Pept-1) From Bacillus Anthracis Str. 'Ames Ancestor'. also contains other interesting chemical elements:

Sodium (Na) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the 1.55 Angstrom Resolution Crystal Structure of Peptidase T (Pept-1) From Bacillus Anthracis Str. 'Ames Ancestor'. (pdb code 3ife). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the 1.55 Angstrom Resolution Crystal Structure of Peptidase T (Pept-1) From Bacillus Anthracis Str. 'Ames Ancestor'., PDB code: 3ife:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3ife

Go back to Zinc Binding Sites List in 3ife
Zinc binding site 1 out of 2 in the 1.55 Angstrom Resolution Crystal Structure of Peptidase T (Pept-1) From Bacillus Anthracis Str. 'Ames Ancestor'.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of 1.55 Angstrom Resolution Crystal Structure of Peptidase T (Pept-1) From Bacillus Anthracis Str. 'Ames Ancestor'. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn411

b:19.6
occ:0.70
OD1 A:ASP142 1.9 13.9 1.0
O A:HOH958 2.0 16.4 0.7
OD1 A:ASP199 2.1 16.2 1.0
NE2 A:HIS79 2.1 13.8 1.0
O A:HOH958 2.3 13.9 0.3
OD2 A:ASP199 2.4 16.9 1.0
CG A:ASP199 2.6 15.3 1.0
CG A:ASP142 2.9 16.6 1.0
O A:HOH892 2.9 26.9 0.5
CE1 A:HIS79 3.1 12.1 1.0
CD2 A:HIS79 3.1 11.7 1.0
OD2 A:ASP142 3.2 23.3 1.0
ZN A:ZN412 3.6 28.6 0.2
CB A:ASP143 3.9 11.8 1.0
OE2 A:GLU177 3.9 29.6 1.0
OE1 A:GLU176 4.0 20.2 1.0
CB A:ASP199 4.1 13.3 1.0
O A:HOH706 4.1 28.1 1.0
ND1 A:HIS79 4.2 12.5 1.0
CB A:ASP142 4.2 13.1 1.0
CD A:GLU176 4.3 19.2 1.0
CG A:HIS79 4.3 11.6 1.0
CG A:ASP143 4.3 11.8 1.0
OE2 A:GLU176 4.3 22.9 1.0
CA A:ASP142 4.6 13.3 1.0
O A:ASP199 4.6 14.4 1.0
C A:ASP142 4.7 13.4 1.0
O A:HOH863 4.7 36.1 1.0
CA A:ASP143 4.7 11.1 1.0
N A:ASP143 4.7 10.9 1.0
OD1 A:ASP143 4.7 11.8 1.0
OD2 A:ASP143 4.7 11.9 1.0
O A:HOH474 4.8 34.3 1.0
CD A:GLU177 4.8 23.5 1.0
CA A:ASP199 4.9 12.2 1.0

Zinc binding site 2 out of 2 in 3ife

Go back to Zinc Binding Sites List in 3ife
Zinc binding site 2 out of 2 in the 1.55 Angstrom Resolution Crystal Structure of Peptidase T (Pept-1) From Bacillus Anthracis Str. 'Ames Ancestor'.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of 1.55 Angstrom Resolution Crystal Structure of Peptidase T (Pept-1) From Bacillus Anthracis Str. 'Ames Ancestor'. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn412

b:28.6
occ:0.20
OD2 A:ASP142 2.0 23.3 1.0
OE2 A:GLU177 2.0 29.6 1.0
NE2 A:HIS381 2.2 31.3 1.0
O A:HOH958 2.2 16.4 0.7
CD A:GLU177 2.8 23.5 1.0
OE1 A:GLU177 2.8 25.4 1.0
O A:HOH958 2.9 13.9 0.3
CE1 A:HIS381 3.0 31.1 1.0
CG A:ASP142 3.0 16.6 1.0
CD2 A:HIS381 3.3 30.3 1.0
OD1 A:ASP142 3.5 13.9 1.0
ZN A:ZN411 3.6 19.6 0.7
O A:HOH892 4.0 26.9 0.5
O A:HOH668 4.1 16.4 1.0
ND1 A:HIS381 4.2 31.0 1.0
CG A:GLU177 4.2 17.0 1.0
OE1 A:GLU176 4.3 20.2 1.0
CB A:ASP142 4.3 13.1 1.0
CG A:HIS381 4.4 26.1 1.0
NE2 A:HIS79 4.7 13.8 1.0
CE1 A:HIS79 4.7 12.1 1.0
OE2 A:GLU176 4.9 22.9 1.0

Reference:

G.Minasov, A.Halavaty, L.Shuvalova, I.Dubrovska, J.Winsor, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.55 Angstrom Resolution Crystal Structure of Peptidase T (Pept-1) From Bacillus Anthracis Str. 'Ames Ancestor'. To Be Published.
Page generated: Wed Dec 16 04:26:16 2020

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