Zinc in PDB 3ibm: Crystal Structure of Cupin 2 Domain-Containing Protein HHAL_0468 From Halorhodospira Halophila

The structure of Crystal Structure of Cupin 2 Domain-Containing Protein HHAL_0468 From Halorhodospira Halophila, PDB code: 3ibm was solved by Y.Patskovsky, R.Toro, J.Freeman, S.Miller, J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Research Center For Structural Genomics(Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	47.791, 51.734, 117.784, 90.00, 90.00, 90.00
R / Rfree (%)	19.8 / 25.8

The structure of Crystal Structure of Cupin 2 Domain-Containing Protein HHAL_0468 From Halorhodospira Halophila also contains other interesting chemical elements:

Potassium

(K)

2 atoms

The binding sites of Zinc atom in the Crystal Structure of Cupin 2 Domain-Containing Protein HHAL_0468 From Halorhodospira Halophila (pdb code 3ibm). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Cupin 2 Domain-Containing Protein HHAL_0468 From Halorhodospira Halophila, PDB code: 3ibm:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Cupin 2 Domain-Containing Protein HHAL_0468 From Halorhodospira Halophila


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Cupin 2 Domain-Containing Protein HHAL_0468 From Halorhodospira Halophila within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn200 b:30.4 occ:1.00 NE2 A:HIS76 2.1 25.8 1.0 NE2 A:HIS72 2.1 20.2 1.0 NE2 A:HIS110 2.2 25.4 1.0 OE1 A:GLU70 2.2 33.4 1.0 O A:HOH237 2.2 31.6 1.0 O A:HOH238 2.3 25.0 1.0 CD2 A:HIS76 3.1 25.4 1.0 CE1 A:HIS72 3.1 22.4 1.0 CE1 A:HIS76 3.1 29.2 1.0 CE1 A:HIS110 3.1 27.5 1.0 CD2 A:HIS72 3.1 22.5 1.0 CD2 A:HIS110 3.2 24.0 1.0 CD A:GLU70 3.4 38.5 1.0 CG A:GLU70 3.9 37.2 1.0 O A:HOH249 4.1 55.7 1.0 ND1 A:HIS76 4.2 26.5 1.0 CG A:HIS76 4.2 26.3 1.0 ND1 A:HIS72 4.2 27.0 1.0 ND1 A:HIS110 4.2 28.4 1.0 CG A:HIS72 4.3 17.8 1.0 CG A:HIS110 4.3 26.7 1.0 OE2 A:GLU70 4.4 32.6 1.0 O A:HOH193 4.5 50.8 1.0 NE2 A:HIS74 4.7 26.2 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Cupin 2 Domain-Containing Protein HHAL_0468 From Halorhodospira Halophila


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Cupin 2 Domain-Containing Protein HHAL_0468 From Halorhodospira Halophila within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn200 b:30.6 occ:1.00 NE2 B:HIS110 2.1 24.4 1.0 O B:HOH195 2.1 38.3 1.0 O B:HOH212 2.1 18.7 1.0 NE2 B:HIS72 2.2 25.5 1.0 NE2 B:HIS76 2.2 28.1 1.0 OE2 B:GLU70 2.3 36.2 1.0 CE1 B:HIS110 3.0 19.1 1.0 CD2 B:HIS76 3.1 28.6 1.0 CE1 B:HIS72 3.1 27.5 1.0 CD2 B:HIS110 3.2 25.3 1.0 CD2 B:HIS72 3.2 25.8 1.0 CE1 B:HIS76 3.2 29.1 1.0 CD B:GLU70 3.5 37.4 1.0 O B:HOH231 3.7 59.5 1.0 CG B:GLU70 4.0 35.7 1.0 ND1 B:HIS110 4.2 20.4 1.0 ND1 B:HIS72 4.2 23.1 1.0 CG B:HIS76 4.2 25.4 1.0 CG B:HIS110 4.3 19.9 1.0 ND1 B:HIS76 4.3 25.9 1.0 CG B:HIS72 4.3 29.3 1.0 O B:HOH235 4.3 44.9 1.0 OE1 B:GLU70 4.5 33.6 1.0 O B:HOH234 4.6 40.6 1.0 NE2 B:HIS74 4.7 31.1 1.0 O B:HOH186 4.8 43.8 1.0

Y.Patskovsky, R.Toro, J.Freeman, S.Miller, J.M.Sauder, S.K.Burley, S.C.Almo. Crystal Structure of Cupin 2 Domain-Containing Protein HHAL_0468 From Halorhodospira Halophila To Be Published.