Zinc in PDB 3i9f: Crystal Structure of A Putative Type 11 Methyltransferase From Sulfolobus Solfataricus

The structure of Crystal Structure of A Putative Type 11 Methyltransferase From Sulfolobus Solfataricus, PDB code: 3i9f was solved by J.B.Bonanno, M.Dickey, K.T.Bain, S.Chang, S.Ozyurt, J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Research Center For Structural Genomics(Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.50
Space group	P 21 3
Cell size a, b, c (Å), α, β, γ (°)	116.728, 116.728, 116.728, 90.00, 90.00, 90.00
R / Rfree (%)	21.5 / 25.7

The binding sites of Zinc atom in the Crystal Structure of A Putative Type 11 Methyltransferase From Sulfolobus Solfataricus (pdb code 3i9f). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 6 binding sites of Zinc where determined in the Crystal Structure of A Putative Type 11 Methyltransferase From Sulfolobus Solfataricus, PDB code: 3i9f:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6;

Zinc binding site 1 out of 6 in the Crystal Structure of A Putative Type 11 Methyltransferase From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Putative Type 11 Methyltransferase From Sulfolobus Solfataricus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1 b:45.9 occ:1.00 NE2 A:HIS180 1.9 42.8 1.0 NE2 A:HIS184 2.0 50.7 1.0 OD1 A:ASP118 2.1 49.4 1.0 ND1 A:HIS182 2.3 48.6 1.0 CE1 A:HIS180 2.7 47.2 1.0 CG A:ASP118 2.7 49.5 1.0 OD2 A:ASP118 2.7 50.9 1.0 CE1 A:HIS184 2.9 54.2 1.0 CD2 A:HIS184 3.0 55.2 1.0 CD2 A:HIS180 3.1 45.3 1.0 CG A:HIS182 3.2 48.0 1.0 CE1 A:HIS182 3.3 47.9 1.0 CB A:HIS182 3.4 50.2 1.0 O A:HIS182 3.8 52.1 1.0 ND1 A:HIS180 3.9 47.4 1.0 ND1 A:HIS184 4.1 55.2 1.0 CG A:HIS184 4.1 55.3 1.0 CG A:HIS180 4.1 51.7 1.0 CB A:ASP118 4.2 47.4 1.0 CD2 A:HIS182 4.3 48.1 1.0 NE2 A:HIS182 4.3 47.9 1.0 C A:HIS182 4.4 51.4 1.0 CA A:HIS182 4.5 51.0 1.0 ND2 A:ASN88 4.5 40.1 1.0 N A:ASP118 4.8 45.0 1.0 CA A:ASP118 4.8 47.0 1.0

Zinc binding site 2 out of 6 in the Crystal Structure of A Putative Type 11 Methyltransferase From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Putative Type 11 Methyltransferase From Sulfolobus Solfataricus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn2 b:42.2 occ:0.33 OD1 A:ASP104 2.1 34.4 1.0 O A:HOH196 2.2 46.2 0.3 CG A:ASP104 2.7 34.5 1.0 OD2 A:ASP104 2.8 35.5 1.0 CB A:ASP104 4.2 33.6 1.0 CA A:ASP104 4.9 33.6 1.0 N A:ASP104 4.9 33.3 1.0

Zinc binding site 3 out of 6 in the Crystal Structure of A Putative Type 11 Methyltransferase From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of A Putative Type 11 Methyltransferase From Sulfolobus Solfataricus within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn5 b:54.7 occ:1.00 OE2 A:GLU68 2.1 56.7 1.0 OE1 A:GLU71 2.2 50.6 1.0 OE2 A:GLU71 2.3 49.5 1.0 CD A:GLU71 2.6 51.7 1.0 CD A:GLU68 2.8 57.8 1.0 OE1 A:GLU68 3.0 60.2 1.0 CG A:GLU71 4.1 51.9 1.0 CG A:GLU68 4.1 54.4 1.0 CA A:GLU68 4.6 52.0 1.0 CB A:GLU71 4.8 53.8 1.0 N A:GLU68 4.9 51.4 1.0 CB A:GLU68 5.0 52.1 1.0

Zinc binding site 4 out of 6 in the Crystal Structure of A Putative Type 11 Methyltransferase From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of A Putative Type 11 Methyltransferase From Sulfolobus Solfataricus within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn3 b:45.4 occ:1.00 NE2 B:HIS180 1.8 47.8 1.0 OD1 B:ASP118 1.9 44.3 1.0 NE2 B:HIS184 2.1 53.9 1.0 ND1 B:HIS182 2.2 45.5 1.0 CE1 B:HIS180 2.5 49.4 1.0 CG B:ASP118 2.7 45.9 1.0 OD2 B:ASP118 2.9 48.5 1.0 CE1 B:HIS184 3.0 53.8 1.0 CD2 B:HIS180 3.0 49.6 1.0 CD2 B:HIS184 3.1 54.7 1.0 CG B:HIS182 3.2 43.8 1.0 CE1 B:HIS182 3.2 44.1 1.0 CB B:HIS182 3.4 46.3 1.0 ND1 B:HIS180 3.7 47.9 1.0 O B:HIS182 3.8 49.2 1.0 CG B:HIS180 4.0 52.7 1.0 ND1 B:HIS184 4.1 52.6 1.0 CG B:HIS184 4.2 51.8 1.0 CB B:ASP118 4.2 43.5 1.0 NE2 B:HIS182 4.3 45.6 1.0 CD2 B:HIS182 4.3 44.4 1.0 C B:HIS182 4.4 48.2 1.0 ND2 B:ASN88 4.4 41.9 1.0 CA B:HIS182 4.5 47.3 1.0 CA B:ASP118 4.7 43.2 1.0 N B:ASP118 4.8 42.1 1.0

Zinc binding site 5 out of 6 in the Crystal Structure of A Putative Type 11 Methyltransferase From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of A Putative Type 11 Methyltransferase From Sulfolobus Solfataricus within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn4 b:35.9 occ:0.33 OD1 B:ASP104 2.0 28.8 1.0 O B:HOH194 2.1 34.8 0.3 CG B:ASP104 2.7 28.9 1.0 OD2 B:ASP104 2.7 32.2 1.0 CB B:ASP104 4.2 27.8 1.0 N B:ASP104 4.8 28.9 1.0 CA B:ASP104 4.8 28.2 1.0

Zinc binding site 6 out of 6 in the Crystal Structure of A Putative Type 11 Methyltransferase From Sulfolobus Solfataricus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of A Putative Type 11 Methyltransferase From Sulfolobus Solfataricus within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn6 b:54.3 occ:1.00 OE2 B:GLU68 1.9 51.9 1.0 OE1 B:GLU71 1.9 46.8 1.0 OE2 B:GLU71 2.6 46.4 1.0 CD B:GLU71 2.6 48.4 1.0 CD B:GLU68 2.7 52.4 1.0 OE1 B:GLU68 2.9 56.0 1.0 CG B:GLU68 4.1 52.5 1.0 CG B:GLU71 4.1 50.3 1.0 CA B:GLU68 4.6 50.9 1.0 N B:GLU68 4.7 50.3 1.0 CB B:GLU71 4.7 52.2 1.0 CB B:GLU68 4.9 51.2 1.0

J.B.Bonanno, M.Dickey, K.T.Bain, S.Chang, S.Ozyurt, J.M.Sauder, S.K.Burley, S.C.Almo. Crystal Structure of A Putative Type 11 Methyltransferase From Sulfolobus Solfataricus To Be Published.