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Zinc in PDB 3hci: Structure of Msrb From Xanthomonas Campestris (Complex-Like Form)

Enzymatic activity of Structure of Msrb From Xanthomonas Campestris (Complex-Like Form)

All present enzymatic activity of Structure of Msrb From Xanthomonas Campestris (Complex-Like Form):
1.8.4.11;

Protein crystallography data

The structure of Structure of Msrb From Xanthomonas Campestris (Complex-Like Form), PDB code: 3hci was solved by F.M.Ranaivoson, B.Kauffmann, F.Favier, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.25 / 2.59
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 39.436, 74.203, 122.941, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 24.7

Other elements in 3hci:

The structure of Structure of Msrb From Xanthomonas Campestris (Complex-Like Form) also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Msrb From Xanthomonas Campestris (Complex-Like Form) (pdb code 3hci). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Structure of Msrb From Xanthomonas Campestris (Complex-Like Form), PDB code: 3hci:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3hci

Go back to Zinc Binding Sites List in 3hci
Zinc binding site 1 out of 2 in the Structure of Msrb From Xanthomonas Campestris (Complex-Like Form)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Msrb From Xanthomonas Campestris (Complex-Like Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1000

b:27.0
occ:1.00
SG A:CYS102 2.2 18.7 1.0
SG A:CYS105 2.3 20.2 1.0
SG A:CYS53 2.4 19.3 1.0
SG A:CYS56 2.4 20.3 1.0
CB A:CYS102 3.2 18.7 1.0
CB A:CYS105 3.2 20.8 1.0
CB A:CYS53 3.2 19.4 1.0
CB A:CYS56 3.3 19.2 1.0
N A:CYS56 3.7 19.4 1.0
N A:CYS105 3.7 20.6 1.0
CA A:CYS56 4.0 19.5 1.0
CA A:CYS105 4.1 20.9 1.0
CB A:ARG104 4.6 20.0 1.0
C A:CYS56 4.6 19.4 1.0
CB A:LEU58 4.6 18.4 1.0
CA A:CYS102 4.6 18.6 1.0
CB A:LEU55 4.6 19.4 1.0
CA A:CYS53 4.7 19.5 1.0
OG A:SER107 4.8 20.9 1.0
C A:CYS105 4.8 21.3 1.0
C A:LEU55 4.8 19.5 1.0
N A:GLY57 4.8 19.3 1.0
C A:ARG104 4.8 20.3 1.0
CB A:SER107 4.9 20.7 1.0
N A:LEU58 4.9 18.9 1.0
N A:ASP106 4.9 21.8 1.0
C A:CYS102 5.0 18.9 1.0

Zinc binding site 2 out of 2 in 3hci

Go back to Zinc Binding Sites List in 3hci
Zinc binding site 2 out of 2 in the Structure of Msrb From Xanthomonas Campestris (Complex-Like Form)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Structure of Msrb From Xanthomonas Campestris (Complex-Like Form) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1000

b:27.8
occ:1.00
SG B:CYS53 2.3 22.9 1.0
SG B:CYS102 2.4 25.3 1.0
SG B:CYS56 2.4 20.3 1.0
SG B:CYS105 2.4 23.1 1.0
CB B:CYS102 3.2 24.8 1.0
CB B:CYS53 3.2 22.9 1.0
CB B:CYS56 3.3 20.8 1.0
CB B:CYS105 3.4 24.6 1.0
N B:CYS56 3.8 21.4 1.0
N B:CYS105 3.9 24.9 1.0
CA B:CYS56 4.1 21.0 1.0
CA B:CYS105 4.2 24.8 1.0
CB B:ARG104 4.6 25.1 1.0
CA B:CYS102 4.6 24.9 1.0
C B:CYS56 4.7 21.1 1.0
CA B:CYS53 4.7 23.1 1.0
CB B:LEU55 4.7 21.6 1.0
CB B:LEU58 4.7 21.4 1.0
OG B:SER107 4.8 24.5 1.0
C B:ARG104 4.8 24.9 1.0
N B:GLY57 4.8 21.1 1.0
CB B:SER107 4.9 23.9 1.0
C B:LEU55 4.9 21.7 1.0
N B:LEU58 4.9 21.1 1.0
C B:CYS105 5.0 25.1 1.0

Reference:

F.M.Ranaivoson, F.Neiers, B.Kauffmann, S.Boschi-Muller, G.Branlant, F.Favier. Methionine Sulfoxide Reductase B Displays A High Level of Flexibility. J.Mol.Biol. V. 394 83 2009.
ISSN: ISSN 0022-2836
PubMed: 19733575
DOI: 10.1016/J.JMB.2009.08.073
Page generated: Thu Oct 24 14:23:45 2024

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