Zinc in PDB 3h3e: Crystal Structure of TM1679, A Metal-Dependent Hydrolase of the Beta-Lactamase Superfamily

The structure of Crystal Structure of TM1679, A Metal-Dependent Hydrolase of the Beta-Lactamase Superfamily, PDB code: 3h3e was solved by D.R.Cooper, N.Olekhnovitch, U.Derewenda, Z.S.Derewenda, Integrated Center For Structure And Function Innovation(Isfi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.23 / 2.75
Space group	P 61
Cell size a, b, c (Å), α, β, γ (°)	127.169, 127.169, 41.044, 90.00, 90.00, 120.00
R / Rfree (%)	15.1 / 20.7

The binding sites of Zinc atom in the Crystal Structure of TM1679, A Metal-Dependent Hydrolase of the Beta-Lactamase Superfamily (pdb code 3h3e). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of TM1679, A Metal-Dependent Hydrolase of the Beta-Lactamase Superfamily, PDB code: 3h3e:

Zinc binding site 1 out of 1 in the Crystal Structure of TM1679, A Metal-Dependent Hydrolase of the Beta-Lactamase Superfamily


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of TM1679, A Metal-Dependent Hydrolase of the Beta-Lactamase Superfamily within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn256 b:34.2 occ:1.00 ND1 A:HIS59 2.2 25.6 1.0 NE2 A:HIS57 2.3 15.9 1.0 NE2 A:HIS170 2.4 18.3 1.0 CE1 A:HIS59 3.0 32.4 1.0 CD2 A:HIS57 3.2 13.8 1.0 CG A:HIS59 3.3 21.9 1.0 CD2 A:HIS170 3.3 20.9 1.0 CE1 A:HIS170 3.3 17.8 1.0 CE1 A:HIS57 3.3 21.3 1.0 SG A:CYS168 3.6 33.9 1.0 CB A:CYS168 3.7 20.4 1.0 CB A:HIS59 3.7 17.9 1.0 NE2 A:HIS59 4.1 31.2 1.0 NE2 A:HIS62 4.1 28.6 1.0 CD2 A:HIS59 4.3 21.7 1.0 CD2 A:HIS62 4.3 26.2 1.0 CG A:HIS57 4.4 12.8 1.0 ND1 A:HIS57 4.4 21.4 1.0 ND1 A:HIS170 4.5 17.6 1.0 CG A:HIS170 4.5 23.1 1.0 OD1 A:ASP61 4.5 29.0 1.0 OD2 A:ASP61 4.8 38.8 1.0 CE2 A:PHE148 4.8 16.3 1.0

D.R.Cooper, N.Olekhnovitch, Z.S.Derewenda. Crystal Structure of TM1679, A Metal-Dependent Hydrolase of the Beta-Lactamase Superfamily To Be Published.