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Zinc in PDB 3h1w: Crystal Structure of Mannose 6-Phosphate Isomerase Bound with Zinc and Yttrium

Enzymatic activity of Crystal Structure of Mannose 6-Phosphate Isomerase Bound with Zinc and Yttrium

All present enzymatic activity of Crystal Structure of Mannose 6-Phosphate Isomerase Bound with Zinc and Yttrium:
5.3.1.8;

Protein crystallography data

The structure of Crystal Structure of Mannose 6-Phosphate Isomerase Bound with Zinc and Yttrium, PDB code: 3h1w was solved by S.R.Sagurthi, G.Giri, H.S.Savithri, M.R.N.Murthy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.95 / 1.94
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 35.980, 92.360, 111.490, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 23.6

Other elements in 3h1w:

The structure of Crystal Structure of Mannose 6-Phosphate Isomerase Bound with Zinc and Yttrium also contains other interesting chemical elements:

Yttrium (Y) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Mannose 6-Phosphate Isomerase Bound with Zinc and Yttrium (pdb code 3h1w). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Mannose 6-Phosphate Isomerase Bound with Zinc and Yttrium, PDB code: 3h1w:

Zinc binding site 1 out of 1 in 3h1w

Go back to Zinc Binding Sites List in 3h1w
Zinc binding site 1 out of 1 in the Crystal Structure of Mannose 6-Phosphate Isomerase Bound with Zinc and Yttrium


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Mannose 6-Phosphate Isomerase Bound with Zinc and Yttrium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn397

b:19.4
occ:0.50
O A:HOH625 1.8 33.7 1.0
OE2 A:GLU134 2.0 26.1 1.0
NE2 A:HIS255 2.1 13.1 1.0
NE2 A:HIS99 2.2 20.1 1.0
CD A:GLU134 2.9 25.1 1.0
CE1 A:HIS255 3.0 14.0 1.0
CD2 A:HIS255 3.1 12.1 1.0
CE1 A:HIS99 3.1 19.8 1.0
OE1 A:GLU134 3.1 25.0 1.0
CD2 A:HIS99 3.2 18.3 1.0
CD1 A:LEU249 3.5 23.5 1.0
Y A:Y1398 3.7 18.2 0.5
ND1 A:HIS255 4.1 13.1 1.0
OE1 A:GLN97 4.1 14.4 1.0
O A:HOH597 4.1 30.0 1.0
CG A:HIS255 4.1 10.8 1.0
ND1 A:HIS99 4.2 17.0 1.0
CG A:GLU134 4.3 20.5 1.0
CG A:HIS99 4.3 16.3 1.0
O A:HOH626 4.4 31.3 1.0
OH A:TYR257 4.4 19.9 1.0
OE2 A:GLU264 4.6 26.0 1.0
CB A:LEU249 4.6 17.1 1.0
CG A:LEU249 4.7 18.8 1.0
CB A:GLU134 4.9 19.0 1.0
CB A:GLN97 4.9 11.4 1.0
O A:HOH582 5.0 37.4 1.0
O A:HOH599 5.0 26.7 1.0

Reference:

S.R.Sagurthi, G.Giri, H.S.Savithri, M.R.N.Murthy. Crystal Structure of Mannose 6-Phosphate Isomerase Fromsalmonella Typhimurium Bound to Metal Atoms and Substrate: Implications For Catalytic Mechanism To Be Published.
Page generated: Wed Dec 16 04:22:47 2020

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