Zinc in PDB 3gzu: VP7 Recoated Rotavirus Dlp
Zinc Binding Sites:
The binding sites of Zinc atom in the VP7 Recoated Rotavirus Dlp
(pdb code 3gzu). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 5 binding sites of Zinc where determined in the
VP7 Recoated Rotavirus Dlp, PDB code: 3gzu:
Jump to Zinc binding site number:
1;
2;
3;
4;
5;
Zinc binding site 1 out
of 5 in 3gzu
Go back to
Zinc Binding Sites List in 3gzu
Zinc binding site 1 out
of 5 in the VP7 Recoated Rotavirus Dlp
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 1 of VP7 Recoated Rotavirus Dlp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Zn398
b:42.6
occ:1.00
|
NE2
|
C:HIS153
|
2.5
|
88.6
|
1.0
|
NE2
|
D:HIS153
|
2.6
|
0.5
|
1.0
|
NE2
|
E:HIS153
|
2.8
|
92.1
|
1.0
|
CE1
|
C:HIS153
|
2.9
|
88.6
|
1.0
|
CE1
|
D:HIS153
|
3.2
|
0.5
|
1.0
|
CE1
|
E:HIS153
|
3.4
|
92.1
|
1.0
|
CD
|
D:LYS154
|
3.5
|
73.5
|
1.0
|
CD2
|
D:HIS153
|
3.7
|
0.5
|
1.0
|
CD2
|
C:HIS153
|
3.8
|
88.6
|
1.0
|
CD
|
C:LYS154
|
3.9
|
82.4
|
1.0
|
CD2
|
E:HIS153
|
4.1
|
92.1
|
1.0
|
ND1
|
C:HIS153
|
4.2
|
88.6
|
1.0
|
CD
|
E:LYS154
|
4.3
|
75.6
|
1.0
|
NZ
|
D:LYS154
|
4.4
|
73.5
|
1.0
|
NZ
|
C:LYS154
|
4.4
|
82.4
|
1.0
|
ND1
|
D:HIS153
|
4.4
|
0.5
|
1.0
|
CG
|
D:LYS154
|
4.5
|
73.5
|
1.0
|
CE
|
D:LYS154
|
4.6
|
73.5
|
1.0
|
ND1
|
E:HIS153
|
4.6
|
92.1
|
1.0
|
CG
|
C:HIS153
|
4.7
|
88.6
|
1.0
|
CG
|
D:HIS153
|
4.7
|
0.5
|
1.0
|
CE
|
C:LYS154
|
4.7
|
82.4
|
1.0
|
CG
|
C:LYS154
|
4.9
|
82.4
|
1.0
|
|
Zinc binding site 2 out
of 5 in 3gzu
Go back to
Zinc Binding Sites List in 3gzu
Zinc binding site 2 out
of 5 in the VP7 Recoated Rotavirus Dlp
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of VP7 Recoated Rotavirus Dlp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Zn398
b:42.6
occ:1.00
|
CE
|
G:LYS154
|
0.9
|
73.5
|
1.0
|
CD
|
G:LYS154
|
1.2
|
73.5
|
1.0
|
NZ
|
G:LYS154
|
1.6
|
73.5
|
1.0
|
CG
|
G:LYS154
|
2.5
|
73.5
|
1.0
|
CB
|
G:LYS154
|
3.5
|
73.5
|
1.0
|
OG
|
G:SER186
|
4.4
|
0.3
|
1.0
|
OE1
|
F:GLU327
|
4.9
|
0.8
|
1.0
|
CA
|
G:LYS154
|
4.9
|
0.8
|
1.0
|
|
Zinc binding site 3 out
of 5 in 3gzu
Go back to
Zinc Binding Sites List in 3gzu
Zinc binding site 3 out
of 5 in the VP7 Recoated Rotavirus Dlp
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 3 of VP7 Recoated Rotavirus Dlp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Zn398
b:42.6
occ:1.00
|
CE1
|
J:HIS153
|
2.9
|
0.5
|
1.0
|
CD
|
J:LYS154
|
2.9
|
73.5
|
1.0
|
NE2
|
J:HIS153
|
3.2
|
0.5
|
1.0
|
CD
|
K:LYS154
|
3.4
|
75.6
|
1.0
|
NZ
|
K:LYS154
|
3.5
|
75.6
|
1.0
|
CG
|
J:LYS154
|
3.5
|
73.5
|
1.0
|
OE1
|
J:GLU327
|
3.7
|
0.9
|
1.0
|
NE2
|
K:HIS153
|
3.7
|
92.1
|
1.0
|
CE
|
K:LYS154
|
4.0
|
75.6
|
1.0
|
ND1
|
J:HIS153
|
4.0
|
0.5
|
1.0
|
CE
|
J:LYS154
|
4.2
|
73.5
|
1.0
|
NZ
|
J:LYS154
|
4.4
|
73.5
|
1.0
|
CE1
|
K:HIS153
|
4.4
|
92.1
|
1.0
|
CD2
|
J:HIS153
|
4.4
|
0.5
|
1.0
|
CB
|
K:ALA338
|
4.5
|
0.4
|
1.0
|
NE2
|
I:HIS153
|
4.5
|
88.6
|
1.0
|
CG
|
K:LYS154
|
4.6
|
75.6
|
1.0
|
CD2
|
K:HIS153
|
4.6
|
92.1
|
1.0
|
CB
|
J:LYS154
|
4.6
|
73.5
|
1.0
|
CG
|
J:HIS153
|
4.9
|
0.5
|
1.0
|
CD
|
J:GLU327
|
4.9
|
0.9
|
1.0
|
CE1
|
I:HIS153
|
4.9
|
88.6
|
1.0
|
|
Zinc binding site 4 out
of 5 in 3gzu
Go back to
Zinc Binding Sites List in 3gzu
Zinc binding site 4 out
of 5 in the VP7 Recoated Rotavirus Dlp
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 4 of VP7 Recoated Rotavirus Dlp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
N:Zn398
b:42.6
occ:1.00
|
NE2
|
N:HIS153
|
2.6
|
92.1
|
1.0
|
NE2
|
M:HIS153
|
2.6
|
0.5
|
1.0
|
CE1
|
M:HIS153
|
2.9
|
0.5
|
1.0
|
NE2
|
L:HIS153
|
3.1
|
88.6
|
1.0
|
CE1
|
N:HIS153
|
3.1
|
92.1
|
1.0
|
CD
|
N:LYS154
|
3.5
|
75.6
|
1.0
|
CD
|
M:LYS154
|
3.7
|
73.5
|
1.0
|
CD2
|
N:HIS153
|
3.7
|
92.1
|
1.0
|
CE1
|
L:HIS153
|
3.7
|
88.6
|
1.0
|
CD2
|
M:HIS153
|
3.9
|
0.5
|
1.0
|
ND1
|
M:HIS153
|
4.2
|
0.5
|
1.0
|
CD2
|
L:HIS153
|
4.3
|
88.6
|
1.0
|
ND1
|
N:HIS153
|
4.3
|
92.1
|
1.0
|
NZ
|
N:LYS154
|
4.4
|
75.6
|
1.0
|
CG
|
N:LYS154
|
4.4
|
75.6
|
1.0
|
CG
|
M:LYS154
|
4.5
|
73.5
|
1.0
|
CE
|
N:LYS154
|
4.5
|
75.6
|
1.0
|
CD
|
L:LYS154
|
4.5
|
82.4
|
1.0
|
NZ
|
L:LYS154
|
4.6
|
82.4
|
1.0
|
CG
|
N:HIS153
|
4.7
|
92.1
|
1.0
|
CG
|
M:HIS153
|
4.7
|
0.5
|
1.0
|
NZ
|
M:LYS154
|
4.8
|
73.5
|
1.0
|
CE
|
M:LYS154
|
4.9
|
73.5
|
1.0
|
CB
|
N:LYS154
|
4.9
|
75.6
|
1.0
|
CB
|
N:ALA338
|
5.0
|
0.4
|
1.0
|
ND1
|
L:HIS153
|
5.0
|
88.6
|
1.0
|
|
Zinc binding site 5 out
of 5 in 3gzu
Go back to
Zinc Binding Sites List in 3gzu
Zinc binding site 5 out
of 5 in the VP7 Recoated Rotavirus Dlp
Mono view
Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 5 of VP7 Recoated Rotavirus Dlp within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Zn398
b:42.6
occ:0.33
|
NE2
|
O:HIS153
|
3.0
|
0.6
|
1.0
|
CE1
|
O:HIS153
|
3.2
|
0.6
|
1.0
|
CD2
|
O:HIS153
|
3.5
|
0.6
|
1.0
|
ND1
|
O:HIS153
|
3.7
|
0.6
|
1.0
|
CG
|
O:HIS153
|
3.9
|
0.6
|
1.0
|
|
Reference:
J.Z.Chen,
E.C.Settembre,
S.T.Aoki,
X.Zhang,
A.R.Bellamy,
P.R.Dormitzer,
S.C.Harrison,
N.Grigorieff.
Molecular Interactions in Rotavirus Assembly and Uncoating Seen By High-Resolution Cryo-Em. Proc.Natl.Acad.Sci.Usa V. 106 10644 2009.
ISSN: ISSN 0027-8424
PubMed: 19487668
DOI: 10.1073/PNAS.0904024106
Page generated: Thu Oct 24 14:04:15 2024
|