Zinc in PDB 3gyy: The Ectoine Binding Protein of the Teaabc Trap Transporter Teaa in the Apo-State

The structure of The Ectoine Binding Protein of the Teaabc Trap Transporter Teaa in the Apo-State, PDB code: 3gyy was solved by S.I.Kuhlmann, A.C.Terwisscha Van Scheltinga, C.Ziegler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.57 / 2.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	74.740, 64.980, 121.500, 90.00, 91.06, 90.00
R / Rfree (%)	21.7 / 28.4

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 36;

Binding sites:

The binding sites of Zinc atom in the The Ectoine Binding Protein of the Teaabc Trap Transporter Teaa in the Apo-State (pdb code 3gyy). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 36 binding sites of Zinc where determined in the The Ectoine Binding Protein of the Teaabc Trap Transporter Teaa in the Apo-State, PDB code: 3gyy:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 36 in the The Ectoine Binding Protein of the Teaabc Trap Transporter Teaa in the Apo-State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Ectoine Binding Protein of the Teaabc Trap Transporter Teaa in the Apo-State within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn317 b:76.0 occ:1.00 OD1 A:ASP31 2.3 71.4 1.0 CG A:ASP31 3.1 71.1 1.0 OD2 A:ASP31 3.3 76.0 1.0 O A:ASP31 4.4 51.4 1.0 CB A:ASP31 4.5 63.1 1.0 CA A:ASP31 4.9 49.2 1.0

Zinc binding site 2 out of 36 in the The Ectoine Binding Protein of the Teaabc Trap Transporter Teaa in the Apo-State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Ectoine Binding Protein of the Teaabc Trap Transporter Teaa in the Apo-State within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn318 b:37.8 occ:1.00 NE2 A:HIS32 2.1 23.4 1.0 OD2 A:ASP227 2.4 44.5 1.0 OD1 A:ASP227 2.4 24.8 1.0 CG A:ASP227 2.7 36.6 1.0 CE1 A:HIS32 3.0 25.4 1.0 CD2 A:HIS32 3.1 28.9 1.0 ND1 A:HIS32 4.1 26.2 1.0 CG A:HIS32 4.2 26.3 1.0 CB A:ASP227 4.2 33.1 1.0 OG A:SER224 4.9 43.3 1.0 CA A:ASP227 5.0 27.6 1.0

Zinc binding site 3 out of 36 in the The Ectoine Binding Protein of the Teaabc Trap Transporter Teaa in the Apo-State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of The Ectoine Binding Protein of the Teaabc Trap Transporter Teaa in the Apo-State within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn320 b:53.6 occ:1.00 O A:HOH374 2.3 36.5 1.0 ND1 A:HIS245 2.4 30.1 1.0 O A:HOH376 2.6 40.5 1.0 O A:HOH375 2.8 30.3 1.0 CG A:HIS245 3.2 25.5 1.0 CB A:HIS245 3.3 21.1 1.0 CE1 A:HIS245 3.4 37.5 1.0 CA A:HIS245 3.6 17.6 1.0 OE2 A:GLU244 4.0 65.9 1.0 CD2 A:HIS245 4.3 33.1 1.0 O A:HIS245 4.4 35.0 1.0 NE2 A:HIS245 4.4 31.4 1.0 C A:HIS245 4.5 25.3 1.0 O A:HOH378 4.6 28.4 1.0 N A:HIS245 4.8 16.4 1.0

Zinc binding site 4 out of 36 in the The Ectoine Binding Protein of the Teaabc Trap Transporter Teaa in the Apo-State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of The Ectoine Binding Protein of the Teaabc Trap Transporter Teaa in the Apo-State within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn321 b:37.2 occ:1.00 OE2 A:GLU290 2.1 36.0 1.0 OE1 A:GLU286 2.4 54.0 1.0 CD A:GLU290 2.8 31.4 1.0 CD A:GLU286 3.0 42.4 1.0 CG A:GLU286 3.2 36.3 1.0 CG A:GLU290 3.2 31.1 1.0 OE1 A:GLU290 3.9 29.7 1.0 OE2 A:GLU286 4.1 38.2 1.0 CB A:GLU286 4.7 34.6 1.0 CB A:GLU290 4.7 28.0 1.0 O A:GLU286 4.9 26.3 1.0

Zinc binding site 5 out of 36 in the The Ectoine Binding Protein of the Teaabc Trap Transporter Teaa in the Apo-State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of The Ectoine Binding Protein of the Teaabc Trap Transporter Teaa in the Apo-State within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn322 b:47.2 occ:1.00 OE1 A:GLU110 2.3 43.0 1.0 OE2 A:GLU110 2.4 38.0 1.0 O A:HOH380 2.5 49.6 1.0 CD A:GLU110 2.6 38.1 1.0 NE2 A:GLN295 3.4 44.1 1.0 CD2 A:LEU107 3.5 45.8 1.0 CG A:GLU110 4.1 25.7 1.0 CD A:GLN295 4.2 40.5 1.0 CG A:GLN295 4.5 28.1 1.0 CG A:LEU107 4.8 45.2 1.0 CB A:GLU110 4.9 19.3 1.0 CA A:LEU107 5.0 21.9 1.0

Zinc binding site 6 out of 36 in the The Ectoine Binding Protein of the Teaabc Trap Transporter Teaa in the Apo-State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of The Ectoine Binding Protein of the Teaabc Trap Transporter Teaa in the Apo-State within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn323 b:0.7 occ:1.00 OE2 A:GLU96 2.5 78.1 1.0 CD A:GLU96 3.4 73.7 1.0 OE1 A:GLU96 3.9 74.5 1.0 OD2 D:ASP240 4.0 51.4 1.0 OD1 D:ASP240 4.1 47.0 1.0 OE2 A:GLU92 4.2 63.3 1.0 OD2 D:ASP236 4.2 58.5 1.0 CG D:ASP236 4.5 53.6 1.0 CG D:ASP240 4.5 47.7 1.0 CG A:GLU96 4.5 64.6 1.0 CB D:ASP236 4.7 42.2 1.0

Zinc binding site 7 out of 36 in the The Ectoine Binding Protein of the Teaabc Trap Transporter Teaa in the Apo-State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of The Ectoine Binding Protein of the Teaabc Trap Transporter Teaa in the Apo-State within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn324 b:34.0 occ:1.00 OE2 A:GLU9 2.0 40.6 1.0 OE1 A:GLU121 2.1 25.7 1.0 CD A:GLU9 2.8 35.1 1.0 OE1 A:GLU9 2.9 26.5 1.0 CD A:GLU121 2.9 24.9 1.0 OE2 A:GLU121 3.2 19.1 1.0 CG A:GLU9 4.2 32.2 1.0 NE1 A:TRP188 4.2 44.5 1.0 CG A:GLU121 4.3 18.8 1.0 CB A:VAL14 4.4 29.6 1.0 NE2 A:GLN15 4.4 29.8 1.0 CE2 A:PHE209 4.5 36.1 1.0 CG A:GLN15 4.5 29.8 1.0 CB A:GLU121 4.6 15.5 1.0 CG2 A:VAL14 4.7 22.6 1.0 N A:VAL14 4.7 27.6 1.0 CD2 A:PHE209 4.7 36.0 1.0 CD A:GLN15 4.9 31.4 1.0 N A:GLN15 4.9 26.0 1.0

Zinc binding site 8 out of 36 in the The Ectoine Binding Protein of the Teaabc Trap Transporter Teaa in the Apo-State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of The Ectoine Binding Protein of the Teaabc Trap Transporter Teaa in the Apo-State within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn317 b:0.3 occ:1.00 OD2 B:ASP31 2.8 61.4 1.0 OE1 A:GLU130 3.1 79.2 1.0 OD1 B:ASP31 3.1 58.7 1.0 CG B:ASP31 3.3 57.0 1.0 CD A:GLU130 4.0 78.2 1.0 CG A:GLU130 4.2 69.6 1.0 OD1 A:ASP129 4.3 65.4 1.0 OD2 A:ASP129 4.5 60.7 1.0 O B:ASP31 4.7 38.8 1.0 CE A:LYS141 4.7 42.1 1.0 CG A:ASP129 4.7 61.5 1.0 NZ A:LYS141 4.8 44.5 1.0 CB B:ASP31 4.8 47.6 1.0

Zinc binding site 9 out of 36 in the The Ectoine Binding Protein of the Teaabc Trap Transporter Teaa in the Apo-State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of The Ectoine Binding Protein of the Teaabc Trap Transporter Teaa in the Apo-State within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn318 b:42.7 occ:1.00 OE2 B:GLU9 1.9 21.1 1.0 OE1 B:GLU121 2.1 27.3 1.0 CD B:GLU9 2.6 31.8 1.0 OE1 B:GLU9 2.7 34.1 1.0 CD B:GLU121 3.2 25.3 1.0 O B:HOH383 3.2 27.1 1.0 OE2 B:GLU121 3.7 25.3 1.0 CG B:GLU9 4.0 28.0 1.0 NE2 B:GLN15 4.3 14.5 1.0 CB B:GLU121 4.3 14.3 1.0 CG B:GLU121 4.3 22.2 1.0 O B:HOH355 4.4 40.5 1.0 CB B:VAL14 4.4 25.5 1.0 CG B:GLN15 4.5 23.8 1.0 CG2 B:VAL14 4.8 26.7 1.0 CE2 B:PHE209 4.8 43.5 1.0 CD B:GLN15 4.9 23.6 1.0 N B:VAL14 4.9 27.6 1.0 N B:GLN15 4.9 27.4 1.0 CD2 B:PHE209 4.9 41.5 1.0 CB B:GLU9 5.0 22.9 1.0

Zinc binding site 10 out of 36 in the The Ectoine Binding Protein of the Teaabc Trap Transporter Teaa in the Apo-State


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of The Ectoine Binding Protein of the Teaabc Trap Transporter Teaa in the Apo-State within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn319 b:39.1 occ:1.00 NE2 B:HIS32 2.1 22.2 1.0 OE2 A:GLU136 2.2 47.5 1.0 OD2 B:ASP227 2.3 38.5 1.0 OD2 A:ASP139 2.4 34.4 0.5 OD1 B:ASP227 2.6 45.2 1.0 CG B:ASP227 2.7 40.1 1.0 CD2 B:HIS32 3.0 22.4 1.0 CE1 B:HIS32 3.1 26.0 1.0 CD A:GLU136 3.2 46.3 1.0 CG A:ASP139 3.4 31.2 0.5 CB A:ASP139 3.5 28.8 0.5 CG A:GLU136 3.6 43.7 1.0 CG B:HIS32 4.1 21.8 1.0 CB B:ASP227 4.2 34.9 1.0 ND1 B:HIS32 4.2 28.1 1.0 O A:GLU136 4.3 23.9 1.0 OE1 A:GLU136 4.3 48.9 1.0 OD1 A:ASP139 4.5 33.4 0.5 CA B:ASP227 4.9 31.4 1.0 CB A:GLU136 4.9 36.0 1.0

F.Marinelli, S.I.Kuhlmann, E.Grell, H.J.Kunte, C.Ziegler, J.D.Faraldo-Gomez. Evidence For An Allosteric Mechanism of Substrate Release From Membrane-Transporter Accessory Binding Proteins Proc.Natl.Acad.Sci.Usa V. 108 E1285 2011.
ISSN: ISSN 0027-8424
PubMed: 22084072
DOI: 10.1073/PNAS.1112534108