Zinc in PDB 3gtv: Human-Mouse SOD1 Chimera

All present enzymatic activity of Human-Mouse SOD1 Chimera:
1.15.1.1;

The structure of Human-Mouse SOD1 Chimera, PDB code: 3gtv was solved by S.V.Seetharaman, A.B.Taylor, P.J.Hart, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.35 / 2.20
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	112.625, 144.007, 112.613, 90.00, 119.82, 90.00
R / Rfree (%)	18.4 / 23.1

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Zinc atom in the Human-Mouse SOD1 Chimera (pdb code 3gtv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 12 binding sites of Zinc where determined in the Human-Mouse SOD1 Chimera, PDB code: 3gtv:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Zinc binding site 1 out of 12 in the Human-Mouse SOD1 Chimera


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Human-Mouse SOD1 Chimera within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn155 b:23.2 occ:1.00 OD1 A:ASP83 2.0 18.7 1.0 ND1 A:HIS63 2.1 19.4 1.0 ND1 A:HIS80 2.2 24.0 1.0 ND1 A:HIS71 2.2 24.6 1.0 CG A:ASP83 2.8 22.5 1.0 OD2 A:ASP83 3.0 24.0 1.0 CE1 A:HIS63 3.0 20.5 1.0 CE1 A:HIS80 3.1 22.7 1.0 CG A:HIS63 3.1 20.0 1.0 CE1 A:HIS71 3.1 22.9 1.0 CG A:HIS80 3.3 22.5 1.0 CG A:HIS71 3.3 25.2 1.0 CB A:HIS63 3.5 19.7 1.0 CB A:HIS71 3.7 23.9 1.0 CB A:HIS80 3.7 20.2 1.0 O A:LYS136 3.7 27.8 1.0 CA A:HIS71 3.9 24.9 1.0 NE2 A:HIS63 4.2 19.4 1.0 CB A:ASP83 4.2 21.4 1.0 CD2 A:HIS63 4.2 20.9 1.0 NE2 A:HIS80 4.2 23.7 1.0 NE2 A:HIS71 4.3 24.9 1.0 CD2 A:HIS80 4.3 25.8 1.0 CD2 A:HIS71 4.4 22.7 1.0 CA A:ASP83 4.6 20.1 1.0 O A:HOH165 4.8 25.0 1.0 N A:GLY72 4.8 25.4 1.0 C A:LYS136 4.8 27.8 1.0 CD2 A:HIS46 4.8 16.6 1.0 N A:HIS80 4.8 23.5 1.0 CA A:HIS80 4.9 23.2 1.0 N A:HIS71 4.9 26.4 1.0 C A:HIS71 4.9 24.0 1.0 N A:ASP83 5.0 23.6 1.0 CA A:HIS63 5.0 21.3 1.0

Zinc binding site 2 out of 12 in the Human-Mouse SOD1 Chimera


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Human-Mouse SOD1 Chimera within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn155 b:23.7 occ:1.00 OD1 B:ASP83 2.0 21.8 1.0 ND1 B:HIS80 2.1 19.3 1.0 ND1 B:HIS71 2.2 19.6 1.0 ND1 B:HIS63 2.2 17.3 1.0 CG B:ASP83 2.7 21.1 1.0 OD2 B:ASP83 2.8 19.8 1.0 CE1 B:HIS80 2.9 18.8 1.0 CE1 B:HIS71 3.1 19.2 1.0 CG B:HIS63 3.1 16.3 1.0 CG B:HIS80 3.2 21.3 1.0 CE1 B:HIS63 3.3 17.1 1.0 CB B:HIS63 3.3 18.1 1.0 CG B:HIS71 3.3 20.2 1.0 CB B:HIS80 3.7 19.9 1.0 CB B:HIS71 3.8 20.9 1.0 O B:LYS136 3.9 18.4 1.0 CA B:HIS71 4.0 21.7 1.0 NE2 B:HIS80 4.1 20.2 1.0 CB B:ASP83 4.2 18.9 1.0 CD2 B:HIS80 4.2 21.6 1.0 NE2 B:HIS71 4.2 19.6 1.0 CD2 B:HIS63 4.3 17.2 1.0 NE2 B:HIS63 4.3 15.2 1.0 CD2 B:HIS71 4.4 19.1 1.0 N B:HIS80 4.5 20.1 1.0 CA B:ASP83 4.7 19.5 1.0 CA B:HIS80 4.7 21.3 1.0 N B:GLY72 4.8 20.9 1.0 CD2 B:HIS46 4.8 18.6 1.0 CA B:HIS63 4.8 17.1 1.0 N B:ASP83 4.9 19.2 1.0 C B:LYS136 4.9 21.7 1.0 C B:HIS71 4.9 23.2 1.0

Zinc binding site 3 out of 12 in the Human-Mouse SOD1 Chimera


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Human-Mouse SOD1 Chimera within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn155 b:22.7 occ:1.00 OD1 C:ASP83 1.9 18.1 1.0 ND1 C:HIS63 2.2 17.2 1.0 ND1 C:HIS71 2.2 18.1 1.0 ND1 C:HIS80 2.2 18.6 1.0 CG C:ASP83 2.8 20.2 1.0 OD2 C:ASP83 3.0 20.7 1.0 CE1 C:HIS71 3.0 18.9 1.0 CG C:HIS80 3.1 20.0 1.0 CG C:HIS63 3.1 18.5 1.0 CE1 C:HIS80 3.1 19.2 1.0 CE1 C:HIS63 3.2 18.5 1.0 CG C:HIS71 3.3 17.6 1.0 CB C:HIS63 3.4 18.1 1.0 CB C:HIS80 3.4 20.7 1.0 CB C:HIS71 3.8 18.1 1.0 O C:LYS136 3.8 17.5 1.0 CA C:HIS71 4.0 18.1 1.0 NE2 C:HIS80 4.2 20.5 1.0 NE2 C:HIS71 4.2 18.3 1.0 CD2 C:HIS80 4.2 19.4 1.0 CB C:ASP83 4.2 18.7 1.0 CD2 C:HIS63 4.3 19.1 1.0 NE2 C:HIS63 4.3 17.8 1.0 CD2 C:HIS71 4.4 18.8 1.0 N C:HIS80 4.6 19.8 1.0 CA C:HIS80 4.6 20.2 1.0 CA C:ASP83 4.6 18.5 1.0 CD2 C:HIS46 4.8 18.1 1.0 C C:LYS136 4.8 19.2 1.0 N C:GLY72 4.9 20.1 1.0 N C:ASP83 4.9 22.5 1.0 CA C:HIS63 4.9 18.9 1.0 O C:HOH701 5.0 16.1 1.0 N C:HIS71 5.0 19.6 1.0 C C:HIS71 5.0 18.5 1.0

Zinc binding site 4 out of 12 in the Human-Mouse SOD1 Chimera


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Human-Mouse SOD1 Chimera within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn155 b:23.4 occ:1.00 OD1 D:ASP83 2.0 20.2 1.0 ND1 D:HIS80 2.2 18.8 1.0 ND1 D:HIS71 2.2 18.1 1.0 ND1 D:HIS63 2.3 15.6 1.0 CG D:ASP83 2.8 20.6 1.0 OD2 D:ASP83 2.8 20.9 1.0 CE1 D:HIS80 3.1 19.0 1.0 CG D:HIS80 3.2 22.4 1.0 CE1 D:HIS71 3.2 19.3 1.0 CE1 D:HIS63 3.2 18.1 1.0 CG D:HIS71 3.2 18.9 1.0 CG D:HIS63 3.3 16.3 1.0 CB D:HIS80 3.5 21.5 1.0 CB D:HIS71 3.5 17.3 1.0 CB D:HIS63 3.6 18.1 1.0 O D:LYS136 3.8 19.4 1.0 CA D:HIS71 3.9 17.3 1.0 CB D:ASP83 4.2 21.0 1.0 NE2 D:HIS80 4.2 20.1 1.0 CD2 D:HIS80 4.3 20.4 1.0 NE2 D:HIS71 4.3 18.5 1.0 NE2 D:HIS63 4.3 15.4 1.0 CD2 D:HIS71 4.4 19.8 1.0 CD2 D:HIS63 4.4 16.5 1.0 N D:HIS80 4.6 23.5 1.0 CD2 D:HIS46 4.7 17.7 1.0 CA D:ASP83 4.7 21.4 1.0 CA D:HIS80 4.7 19.6 1.0 C D:LYS136 4.8 23.1 1.0 N D:GLY72 4.8 19.9 1.0 O D:HOH162 4.8 17.8 1.0 C D:HIS71 4.9 20.5 1.0 N D:HIS71 4.9 18.7 1.0 N D:ASP83 5.0 23.6 1.0

Zinc binding site 5 out of 12 in the Human-Mouse SOD1 Chimera


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Human-Mouse SOD1 Chimera within 5.0Å range: probe atom residue distance (Å) B Occ E:Zn155 b:31.8 occ:1.00 OD1 E:ASP83 2.0 31.8 1.0 ND1 E:HIS63 2.2 27.3 1.0 ND1 E:HIS80 2.2 28.0 1.0 ND1 E:HIS71 2.4 30.0 1.0 CG E:ASP83 3.0 32.5 1.0 CG E:HIS63 3.0 30.3 1.0 CE1 E:HIS80 3.1 29.6 1.0 CE1 E:HIS63 3.2 27.3 1.0 CB E:HIS63 3.2 31.7 1.0 OD2 E:ASP83 3.2 34.1 1.0 CG E:HIS80 3.3 28.1 1.0 CE1 E:HIS71 3.3 30.2 1.0 CG E:HIS71 3.4 29.9 1.0 CB E:HIS80 3.7 29.1 1.0 O E:LYS136 3.7 28.6 1.0 CB E:HIS71 3.7 29.3 1.0 CA E:HIS71 4.0 29.1 1.0 CD2 E:HIS63 4.2 30.2 1.0 NE2 E:HIS80 4.2 31.9 1.0 NE2 E:HIS63 4.3 30.2 1.0 CB E:ASP83 4.3 31.7 1.0 CD2 E:HIS80 4.3 29.6 1.0 NE2 E:HIS71 4.5 31.3 1.0 CD2 E:HIS71 4.5 30.8 1.0 CA E:ASP83 4.7 29.0 1.0 O E:HOH171 4.7 26.7 1.0 C E:LYS136 4.7 30.4 1.0 CA E:HIS63 4.8 28.6 1.0 N E:HIS80 4.8 30.8 1.0 N E:GLY72 4.8 31.3 1.0 CA E:HIS80 4.9 30.5 1.0 N E:ASP83 4.9 29.3 1.0 CD2 E:HIS46 4.9 28.9 1.0 N E:HIS71 5.0 28.6 1.0

Zinc binding site 6 out of 12 in the Human-Mouse SOD1 Chimera


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Human-Mouse SOD1 Chimera within 5.0Å range: probe atom residue distance (Å) B Occ F:Zn155 b:24.1 occ:1.00 OD1 F:ASP83 2.0 19.5 1.0 ND1 F:HIS63 2.1 20.9 1.0 ND1 F:HIS80 2.2 20.0 1.0 ND1 F:HIS71 2.5 22.4 1.0 CG F:ASP83 2.8 22.5 1.0 CE1 F:HIS63 3.1 22.7 1.0 OD2 F:ASP83 3.1 23.5 1.0 CG F:HIS63 3.1 22.2 1.0 CE1 F:HIS80 3.1 21.5 1.0 CG F:HIS80 3.2 21.6 1.0 CE1 F:HIS71 3.4 23.4 1.0 CB F:HIS63 3.4 21.5 1.0 CG F:HIS71 3.5 21.9 1.0 CB F:HIS80 3.5 19.7 1.0 O F:LYS136 3.7 24.4 1.0 CB F:HIS71 3.8 21.6 1.0 CA F:HIS71 4.0 21.1 1.0 NE2 F:HIS63 4.2 22.3 1.0 CD2 F:HIS63 4.2 21.3 1.0 NE2 F:HIS80 4.2 20.4 1.0 CB F:ASP83 4.2 20.8 1.0 CD2 F:HIS80 4.3 21.8 1.0 NE2 F:HIS71 4.5 24.2 1.0 CD2 F:HIS71 4.6 22.1 1.0 N F:HIS80 4.7 23.0 1.0 CA F:ASP83 4.7 22.3 1.0 CA F:HIS80 4.7 22.2 1.0 N F:GLY72 4.7 26.2 1.0 C F:LYS136 4.8 24.3 1.0 C F:HIS71 4.9 23.4 1.0 N F:HIS71 4.9 23.1 1.0 N F:ASP83 4.9 23.1 1.0 CD2 F:HIS46 4.9 21.3 1.0 CA F:HIS63 4.9 20.4 1.0

Zinc binding site 7 out of 12 in the Human-Mouse SOD1 Chimera


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Human-Mouse SOD1 Chimera within 5.0Å range: probe atom residue distance (Å) B Occ G:Zn155 b:22.6 occ:1.00 OD1 G:ASP83 2.0 18.9 1.0 ND1 G:HIS80 2.0 20.2 1.0 ND1 G:HIS71 2.2 20.1 1.0 ND1 G:HIS63 2.3 16.4 1.0 CG G:ASP83 2.8 19.4 1.0 CE1 G:HIS80 2.8 21.2 1.0 OD2 G:ASP83 3.0 23.0 1.0 CG G:HIS80 3.0 21.0 1.0 CE1 G:HIS71 3.0 20.1 1.0 CG G:HIS63 3.2 18.2 1.0 CE1 G:HIS63 3.3 18.6 1.0 CG G:HIS71 3.3 22.4 1.0 CB G:HIS63 3.4 19.7 1.0 CB G:HIS80 3.5 20.6 1.0 CB G:HIS71 3.8 22.9 1.0 NE2 G:HIS80 4.0 21.7 1.0 O G:LYS136 4.0 21.6 1.0 CA G:HIS71 4.0 21.1 1.0 CD2 G:HIS80 4.1 21.3 1.0 CB G:ASP83 4.2 18.9 1.0 NE2 G:HIS71 4.2 21.4 1.0 CD2 G:HIS63 4.4 18.2 1.0 NE2 G:HIS63 4.4 16.3 1.0 CD2 G:HIS71 4.4 20.2 1.0 N G:HIS80 4.6 20.1 1.0 CA G:ASP83 4.7 17.6 1.0 CA G:HIS80 4.7 18.0 1.0 N G:GLY72 4.7 22.2 1.0 N G:ASP83 4.8 19.5 1.0 C G:LYS136 4.9 22.8 1.0 CA G:HIS63 4.9 20.2 1.0 CD2 G:HIS46 4.9 17.0 1.0 C G:HIS71 5.0 22.0 1.0

Zinc binding site 8 out of 12 in the Human-Mouse SOD1 Chimera


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Human-Mouse SOD1 Chimera within 5.0Å range: probe atom residue distance (Å) B Occ H:Zn155 b:21.7 occ:1.00 OD1 H:ASP83 2.0 19.5 1.0 ND1 H:HIS80 2.2 18.7 1.0 ND1 H:HIS63 2.2 18.0 1.0 ND1 H:HIS71 2.3 20.6 1.0 CG H:ASP83 2.8 19.6 1.0 OD2 H:ASP83 2.9 20.8 1.0 CE1 H:HIS80 3.1 18.2 1.0 CE1 H:HIS71 3.1 19.5 1.0 CG H:HIS80 3.1 18.8 1.0 CG H:HIS63 3.2 19.9 1.0 CE1 H:HIS63 3.2 18.3 1.0 CG H:HIS71 3.4 22.5 1.0 CB H:HIS63 3.4 19.2 1.0 CB H:HIS80 3.5 21.4 1.0 CB H:HIS71 3.8 20.1 1.0 O H:LYS136 3.8 21.4 1.0 CA H:HIS71 4.0 19.2 1.0 NE2 H:HIS80 4.2 20.4 1.0 CB H:ASP83 4.2 18.8 1.0 CD2 H:HIS80 4.2 20.7 1.0 NE2 H:HIS71 4.3 20.4 1.0 CD2 H:HIS63 4.3 18.5 1.0 NE2 H:HIS63 4.3 17.6 1.0 CD2 H:HIS71 4.4 21.1 1.0 N H:HIS80 4.7 20.5 1.0 CA H:HIS80 4.7 19.4 1.0 CA H:ASP83 4.7 19.8 1.0 N H:GLY72 4.7 20.4 1.0 C H:LYS136 4.8 21.7 1.0 CA H:HIS63 4.9 20.3 1.0 C H:HIS71 4.9 21.8 1.0 N H:ASP83 4.9 19.2 1.0 N H:HIS71 5.0 21.0 1.0

Zinc binding site 9 out of 12 in the Human-Mouse SOD1 Chimera


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 9 of Human-Mouse SOD1 Chimera within 5.0Å range: probe atom residue distance (Å) B Occ I:Zn155 b:24.8 occ:1.00 ND1 I:HIS80 2.0 22.1 1.0 OD1 I:ASP83 2.0 20.8 1.0 ND1 I:HIS71 2.2 22.2 1.0 ND1 I:HIS63 2.2 20.8 1.0 CE1 I:HIS80 2.8 22.9 1.0 CG I:ASP83 2.8 22.4 1.0 CE1 I:HIS71 3.0 18.8 1.0 OD2 I:ASP83 3.0 22.8 1.0 CG I:HIS80 3.1 22.3 1.0 CG I:HIS63 3.1 20.8 1.0 CE1 I:HIS63 3.2 22.8 1.0 CG I:HIS71 3.3 23.5 1.0 CB I:HIS63 3.4 21.3 1.0 CB I:HIS80 3.6 23.2 1.0 CB I:HIS71 3.7 22.8 1.0 O I:LYS136 3.8 21.4 1.0 NE2 I:HIS80 3.9 27.4 1.0 CA I:HIS71 4.0 23.4 1.0 CD2 I:HIS80 4.1 24.9 1.0 NE2 I:HIS71 4.2 21.9 1.0 CB I:ASP83 4.2 21.6 1.0 CD2 I:HIS63 4.3 20.5 1.0 NE2 I:HIS63 4.3 22.2 1.0 CD2 I:HIS71 4.3 23.5 1.0 CA I:ASP83 4.7 22.9 1.0 N I:HIS80 4.7 26.3 1.0 N I:GLY72 4.7 23.2 1.0 CA I:HIS80 4.8 25.0 1.0 C I:LYS136 4.8 23.4 1.0 N I:ASP83 4.8 22.0 1.0 CD2 I:HIS46 4.9 19.0 1.0 CA I:HIS63 4.9 21.0 1.0 C I:HIS71 5.0 23.7 1.0 O I:HOH287 5.0 24.2 1.0

Zinc binding site 10 out of 12 in the Human-Mouse SOD1 Chimera


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 10 of Human-Mouse SOD1 Chimera within 5.0Å range: probe atom residue distance (Å) B Occ J:Zn155 b:27.4 occ:1.00 OD1 J:ASP83 2.0 24.6 1.0 ND1 J:HIS80 2.2 27.4 1.0 ND1 J:HIS63 2.2 24.6 1.0 ND1 J:HIS71 2.3 30.4 1.0 CG J:ASP83 2.8 28.5 1.0 OD2 J:ASP83 3.0 32.8 1.0 CE1 J:HIS71 3.0 27.3 1.0 CE1 J:HIS80 3.1 29.2 1.0 CG J:HIS63 3.2 23.2 1.0 CG J:HIS80 3.2 28.8 1.0 CE1 J:HIS63 3.2 24.7 1.0 CB J:HIS63 3.4 26.1 1.0 CG J:HIS71 3.4 28.7 1.0 CB J:HIS80 3.5 28.5 1.0 CB J:HIS71 3.9 29.8 1.0 O J:LYS136 3.9 27.9 1.0 CB J:ASP83 4.2 24.6 1.0 CA J:HIS71 4.2 29.6 1.0 NE2 J:HIS80 4.2 31.1 1.0 NE2 J:HIS71 4.3 29.3 1.0 CD2 J:HIS80 4.3 30.5 1.0 CD2 J:HIS63 4.3 22.5 1.0 NE2 J:HIS63 4.3 25.3 1.0 CD2 J:HIS71 4.5 31.2 1.0 CA J:ASP83 4.6 24.1 1.0 N J:HIS80 4.7 29.9 1.0 CA J:HIS80 4.7 28.0 1.0 CD2 J:HIS46 4.7 20.2 1.0 N J:ASP83 4.9 27.5 1.0 N J:GLY72 4.9 31.6 1.0 O J:HOH156 4.9 23.6 1.0 C J:LYS136 4.9 29.4 1.0 O J:GLY72 4.9 28.6 1.0 CA J:HIS63 4.9 25.8 1.0

S.V.Seetharaman, A.B.Taylor, S.Holloway, P.J.Hart. Structures of Mouse SOD1 and Human/Mouse SOD1 Chimeras. Arch.Biochem.Biophys. V. 503 183 2010.
ISSN: ISSN 0003-9861
PubMed: 20727846
DOI: 10.1016/J.ABB.2010.08.014