Atomistry » Zinc » PDB 3gjn-3gtp » 3gq5
Atomistry »
  Zinc »
    PDB 3gjn-3gtp »
      3gq5 »

Zinc in PDB 3gq5: Sequence-Matched Mutm Interrogation Complex 5 (IC5)

Enzymatic activity of Sequence-Matched Mutm Interrogation Complex 5 (IC5)

All present enzymatic activity of Sequence-Matched Mutm Interrogation Complex 5 (IC5):
4.2.99.18;

Protein crystallography data

The structure of Sequence-Matched Mutm Interrogation Complex 5 (IC5), PDB code: 3gq5 was solved by Y.Qi, G.L.Verdine, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.69 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 45.240, 94.443, 104.471, 90.00, 90.00, 90.00
R / Rfree (%) 20.3 / 22

Zinc Binding Sites:

The binding sites of Zinc atom in the Sequence-Matched Mutm Interrogation Complex 5 (IC5) (pdb code 3gq5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Sequence-Matched Mutm Interrogation Complex 5 (IC5), PDB code: 3gq5:

Zinc binding site 1 out of 1 in 3gq5

Go back to Zinc Binding Sites List in 3gq5
Zinc binding site 1 out of 1 in the Sequence-Matched Mutm Interrogation Complex 5 (IC5)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Sequence-Matched Mutm Interrogation Complex 5 (IC5) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn300

b:23.8
occ:1.00
SG A:CYS269 2.2 25.3 1.0
SG A:CYS249 2.3 24.7 1.0
SG A:CYS272 2.3 25.1 1.0
SG A:CYS252 2.4 20.5 1.0
CB A:CYS249 3.1 25.7 1.0
CB A:CYS269 3.3 24.6 1.0
CB A:CYS272 3.3 24.4 1.0
CB A:CYS252 3.4 21.1 1.0
N A:CYS272 3.8 24.4 1.0
N A:CYS252 3.8 23.6 1.0
CE1 A:PHE182 4.1 25.2 1.0
CA A:CYS272 4.1 24.8 1.0
CA A:CYS252 4.2 22.9 1.0
CA A:CYS249 4.6 26.3 1.0
CZ A:PHE182 4.6 26.2 1.0
CB A:ARG271 4.7 24.6 1.0
CB A:THR254 4.7 26.2 1.0
C A:ARG251 4.7 24.7 1.0
CB A:ARG251 4.7 25.7 1.0
CA A:CYS269 4.7 25.0 1.0
C A:CYS252 4.8 22.6 1.0
N A:GLY253 4.8 23.4 1.0
C A:ARG271 4.8 24.8 1.0
OG1 A:THR254 4.9 26.9 1.0
N A:THR254 5.0 26.1 1.0

Reference:

Y.Qi, M.C.Spong, K.Nam, A.Banerjee, S.Jiralerspong, M.Karplus, G.L.Verdine. Encounter and Extrusion of An Intrahelical Lesion By A Dna Repair Enzyme. Nature V. 462 762 2009.
ISSN: ISSN 0028-0836
PubMed: 20010681
DOI: 10.1038/NATURE08561
Page generated: Wed Dec 16 04:21:26 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy