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Zinc in PDB 3g1p: Crystals Structure of Phnp From E.Coli K-12

Protein crystallography data

The structure of Crystals Structure of Phnp From E.Coli K-12, PDB code: 3g1p was solved by K.Podzelinska, Z.Jia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 67.00 / 1.40
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 111.650, 75.405, 83.228, 90.00, 126.33, 90.00
R / Rfree (%) 18.6 / 21

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystals Structure of Phnp From E.Coli K-12 (pdb code 3g1p). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystals Structure of Phnp From E.Coli K-12, PDB code: 3g1p:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3g1p

Go back to Zinc Binding Sites List in 3g1p
Zinc binding site 1 out of 2 in the Crystals Structure of Phnp From E.Coli K-12


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystals Structure of Phnp From E.Coli K-12 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn300

b:14.2
occ:1.00
ND1 A:HIS225 2.1 16.3 1.0
SG A:CYS23 2.3 15.3 1.0
SG A:CYS21 2.3 15.3 1.0
SG A:CYS26 2.3 13.8 1.0
CE1 A:HIS225 3.0 12.6 1.0
CB A:CYS26 3.2 13.9 1.0
CG A:HIS225 3.2 13.6 1.0
CB A:CYS21 3.3 14.8 1.0
CB A:CYS23 3.3 13.9 1.0
CB A:HIS225 3.6 12.2 1.0
N A:CYS23 4.0 15.8 1.0
O A:HOH690 4.0 20.8 1.0
N A:CYS26 4.1 13.2 1.0
NE2 A:HIS225 4.2 14.6 1.0
CA A:CYS23 4.2 15.6 1.0
CA A:CYS26 4.2 13.2 1.0
CD2 A:HIS225 4.3 12.2 1.0
CA A:CYS21 4.5 15.1 1.0
C A:CYS21 4.6 14.9 1.0
O A:HOH694 4.6 30.3 1.0
O A:HOH693 4.6 31.3 1.0
CB A:ALA18 4.7 12.0 1.0
C A:CYS23 4.7 15.3 1.0
O A:CYS21 4.8 14.6 1.0
O A:CYS23 4.8 16.5 1.0
N A:GLU22 4.9 15.7 1.0
N A:ALA18 4.9 11.4 1.0
CA A:HIS225 4.9 12.1 1.0

Zinc binding site 2 out of 2 in 3g1p

Go back to Zinc Binding Sites List in 3g1p
Zinc binding site 2 out of 2 in the Crystals Structure of Phnp From E.Coli K-12


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystals Structure of Phnp From E.Coli K-12 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn301

b:10.2
occ:1.00
ND1 B:HIS225 2.1 8.8 1.0
SG B:CYS26 2.3 9.7 1.0
SG B:CYS21 2.3 11.6 1.0
SG B:CYS23 2.3 11.6 1.0
CE1 B:HIS225 3.0 9.9 1.0
CG B:HIS225 3.1 9.0 1.0
CB B:CYS26 3.2 9.9 1.0
CB B:CYS21 3.3 12.8 1.0
CB B:CYS23 3.3 14.3 1.0
CB B:HIS225 3.5 9.3 1.0
N B:CYS23 4.0 14.4 1.0
N B:CYS26 4.1 10.3 1.0
O B:HOH586 4.1 16.1 1.0
NE2 B:HIS225 4.1 9.9 1.0
CA B:CYS23 4.2 13.7 1.0
CD2 B:HIS225 4.2 10.8 1.0
CA B:CYS26 4.3 10.2 1.0
CA B:CYS21 4.5 12.7 1.0
CB B:ALA18 4.5 9.0 1.0
O B:HOH590 4.6 22.1 1.0
O B:HOH587 4.6 22.7 1.0
C B:CYS21 4.6 13.4 1.0
C B:CYS23 4.7 13.2 1.0
O B:CYS23 4.8 12.9 1.0
CA B:HIS225 4.8 8.3 1.0
N B:ALA18 4.9 8.9 1.0
O B:CYS21 4.9 13.8 1.0
N B:GLU22 5.0 14.2 1.0

Reference:

K.Podzelinska, S.He, M.Wathier, A.Yakunin, M.Proudftoot, B.Hove-Jensen, D.Zechel, Z.Jia. Crystals Structure of Phnp From E.Coli K-12 To Be Published.
Page generated: Sat Sep 26 10:11:57 2020
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