Zinc in PDB 3g0z: Structure of S. Pombe POP2P - ZN2+ and MN2+ Bound Form

The structure of Structure of S. Pombe POP2P - ZN2+ and MN2+ Bound Form, PDB code: 3g0z was solved by K.R.Andersen, A.T.Jonstrup, L.B.Van, D.E.Brodersen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.17 / 2.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	52.733, 53.814, 94.332, 90.00, 90.00, 90.00
R / Rfree (%)	20.6 / 24.7

The structure of Structure of S. Pombe POP2P - ZN2+ and MN2+ Bound Form also contains other interesting chemical elements:

Manganese

(Mn)

1 atom

The binding sites of Zinc atom in the Structure of S. Pombe POP2P - ZN2+ and MN2+ Bound Form (pdb code 3g0z). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of S. Pombe POP2P - ZN2+ and MN2+ Bound Form, PDB code: 3g0z:

Zinc binding site 1 out of 1 in the Structure of S. Pombe POP2P - ZN2+ and MN2+ Bound Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of S. Pombe POP2P - ZN2+ and MN2+ Bound Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn333 b:61.3 occ:1.00 OD2 A:ASP50 2.2 35.8 1.0 OD2 A:ASP240 2.5 37.2 1.0 O A:HOH393 2.5 52.1 1.0 OE2 A:GLU52 2.7 52.8 1.0 CG A:ASP50 3.0 36.4 1.0 OD1 A:ASP50 3.1 34.9 1.0 CD A:GLU52 3.3 45.3 1.0 CG A:ASP240 3.4 38.2 1.0 O A:THR51 3.6 33.3 1.0 CB A:ASP240 3.7 29.6 1.0 OE1 A:GLU52 3.8 44.6 1.0 CG A:GLU52 4.1 38.9 1.0 C A:THR51 4.4 34.0 1.0 CB A:ASP50 4.4 27.7 1.0 OD1 A:ASP240 4.5 39.7 1.0 MN A:MN334 4.6 75.3 1.0 CA A:ALA237 4.6 31.4 1.0 N A:THR51 4.7 30.4 1.0 C A:HIS235 4.7 41.5 1.0 CA A:HIS235 4.8 43.9 1.0 C A:GLN236 4.8 37.1 1.0 N A:ALA237 4.8 31.2 1.0 O A:GLN236 4.8 31.1 1.0

K.R.Andersen, A.T.Jonstrup, L.B.Van, D.E.Brodersen. The Activity and Selectivity of Fission Yeast POP2P Are Affected By A High Affinity For ZN2+ and MN2+ in the Active Site Rna V. 15 850 2009.
ISSN: ISSN 1355-8382
PubMed: 19307292
DOI: 10.1261/RNA.1489409