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Zinc in PDB 3fym: The 1A Structure of Ymfm, A Putative Dna-Binding Membrane Protein From Staphylococcus Aureus

Protein crystallography data

The structure of The 1A Structure of Ymfm, A Putative Dna-Binding Membrane Protein From Staphylococcus Aureus, PDB code: 3fym was solved by L.Xu, S.E.Sedelnikova, P.J.Baker, D.W.Rice, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.00
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 45.456, 45.456, 72.903, 90.00, 90.00, 90.00
R / Rfree (%) 11 / 14

Zinc Binding Sites:

The binding sites of Zinc atom in the The 1A Structure of Ymfm, A Putative Dna-Binding Membrane Protein From Staphylococcus Aureus (pdb code 3fym). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The 1A Structure of Ymfm, A Putative Dna-Binding Membrane Protein From Staphylococcus Aureus, PDB code: 3fym:

Zinc binding site 1 out of 1 in 3fym

Go back to Zinc Binding Sites List in 3fym
Zinc binding site 1 out of 1 in the The 1A Structure of Ymfm, A Putative Dna-Binding Membrane Protein From Staphylococcus Aureus


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The 1A Structure of Ymfm, A Putative Dna-Binding Membrane Protein From Staphylococcus Aureus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2001

b:8.4
occ:1.00
OE2 A:GLU1031 1.9 11.1 1.0
NE2 A:HIS1035 2.0 7.7 1.0
O A:HOH3101 2.0 8.6 1.0
CE1 A:HIS1035 2.9 8.4 1.0
CD A:GLU1031 2.9 9.3 1.0
CD2 A:HIS1035 3.1 8.2 1.0
CG A:GLU1031 3.3 9.4 1.0
O A:GLN1043 3.9 8.8 1.0
OE1 A:GLU1031 4.0 11.3 1.0
ND1 A:HIS1035 4.1 8.2 1.0
CG A:HIS1035 4.2 7.6 1.0
NE2 A:GLN1043 4.3 12.2 1.0
CB A:GLN1043 4.4 7.9 1.0
CE A:MET1032 4.7 11.6 1.0
O A:HOH3007 4.8 11.0 1.0
O A:HOH3005 4.8 9.5 1.0
C A:GLN1043 4.8 7.9 1.0
CB A:GLU1031 4.8 9.0 1.0
SD A:MET1032 4.9 10.9 1.0

Reference:

L.Xu, S.E.Sedelnikova, P.J.Baker, D.W.Rice. The 1A Structure of Ymfm, A Putative Dna-Binding Membrane Protein From Staphylococcus Aureus To Be Published.
Page generated: Sat Sep 26 10:11:48 2020
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