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Zinc in PDB 3fwx: The Crystal Structure of the Peptide Deformylase From Vibrio Cholerae O1 Biovar El Tor Str. N16961

Protein crystallography data

The structure of The Crystal Structure of the Peptide Deformylase From Vibrio Cholerae O1 Biovar El Tor Str. N16961, PDB code: 3fwx was solved by R.Zhang, M.Zhou, J.Stam, W.Anderson, A.Joachimiak, Center For Structuralgenomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 105.41 / 2.00
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 61.305, 61.456, 210.343, 90.00, 90.00, 90.00
R / Rfree (%) 20.2 / 26.2

Zinc Binding Sites:

The binding sites of Zinc atom in the The Crystal Structure of the Peptide Deformylase From Vibrio Cholerae O1 Biovar El Tor Str. N16961 (pdb code 3fwx). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the The Crystal Structure of the Peptide Deformylase From Vibrio Cholerae O1 Biovar El Tor Str. N16961, PDB code: 3fwx:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3fwx

Go back to Zinc Binding Sites List in 3fwx
Zinc binding site 1 out of 2 in the The Crystal Structure of the Peptide Deformylase From Vibrio Cholerae O1 Biovar El Tor Str. N16961


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of the Peptide Deformylase From Vibrio Cholerae O1 Biovar El Tor Str. N16961 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn170

b:73.5
occ:1.00
NE2 A:HIS137 2.0 28.3 1.0
NE2 A:HIS133 2.2 30.5 1.0
SG A:CYS91 2.5 28.5 1.0
CD2 A:HIS137 2.9 29.7 1.0
CD2 A:HIS133 2.9 27.9 1.0
CE1 A:HIS137 3.0 27.6 1.0
CE1 A:HIS133 3.3 32.0 1.0
O A:HOH172 3.5 23.8 1.0
CB A:CYS91 3.6 28.1 1.0
OE1 A:GLN51 3.6 27.0 1.0
NE2 A:GLN51 3.8 20.5 1.0
CD A:GLN51 3.8 29.4 1.0
OE2 A:GLU134 3.9 29.2 1.0
CG A:HIS137 4.0 29.0 1.0
ND1 A:HIS137 4.1 28.2 1.0
CG A:HIS133 4.1 26.8 1.0
OE1 A:GLU134 4.2 29.8 1.0
CA A:CYS91 4.2 27.5 1.0
O A:HOH197 4.3 26.3 1.0
ND1 A:HIS133 4.3 27.2 1.0
CD A:GLU134 4.4 27.7 1.0
O A:GLY90 4.7 26.7 1.0
N A:LEU92 4.8 28.1 1.0
CG A:GLN51 4.9 28.5 1.0
C A:CYS91 4.9 28.6 1.0

Zinc binding site 2 out of 2 in 3fwx

Go back to Zinc Binding Sites List in 3fwx
Zinc binding site 2 out of 2 in the The Crystal Structure of the Peptide Deformylase From Vibrio Cholerae O1 Biovar El Tor Str. N16961


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of The Crystal Structure of the Peptide Deformylase From Vibrio Cholerae O1 Biovar El Tor Str. N16961 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn170

b:37.6
occ:1.00
NE2 B:HIS137 2.1 22.9 1.0
NE2 B:HIS133 2.2 26.8 1.0
SG B:CYS91 2.5 27.7 1.0
CD2 B:HIS133 3.0 23.1 1.0
CD2 B:HIS137 3.0 23.8 1.0
CE1 B:HIS137 3.0 23.5 1.0
CE1 B:HIS133 3.3 25.8 1.0
O B:HOH171 3.4 20.7 1.0
CB B:CYS91 3.5 26.0 1.0
O B:HOH217 3.7 31.6 1.0
OE1 B:GLN51 3.7 25.7 1.0
CD B:GLN51 4.0 26.9 1.0
CA B:CYS91 4.0 26.6 1.0
NE2 B:GLN51 4.0 18.3 1.0
OE2 B:GLU134 4.1 28.3 1.0
ND1 B:HIS137 4.2 21.8 1.0
CG B:HIS137 4.2 26.3 1.0
CG B:HIS133 4.2 24.4 1.0
ND1 B:HIS133 4.3 22.2 1.0
O B:HOH186 4.4 23.2 1.0
OE1 B:GLU134 4.5 28.6 1.0
O B:GLY90 4.6 26.7 1.0
CD B:GLU134 4.6 26.5 1.0
N B:LEU92 4.7 27.7 1.0
C B:CYS91 4.8 27.0 1.0

Reference:

R.Zhang, M.Zhou, J.Stam, W.Anderson, A.Joachimiak. The Crystal Structure of the Peptide Deformylase From Vibrio Cholerae O1 Biovar El Tor To Be Published.
Page generated: Sat Sep 26 10:11:31 2020
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