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Zinc in PDB 3f28: Thermolysin Inhibition

Enzymatic activity of Thermolysin Inhibition

All present enzymatic activity of Thermolysin Inhibition:
3.4.24.27;

Protein crystallography data

The structure of Thermolysin Inhibition, PDB code: 3f28 was solved by L.Englert, A.Heine, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 1.68
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 92.520, 92.520, 128.946, 90.00, 90.00, 120.00
R / Rfree (%) 18.9 / 23.6

Other elements in 3f28:

The structure of Thermolysin Inhibition also contains other interesting chemical elements:

Calcium (Ca) 4 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Thermolysin Inhibition (pdb code 3f28). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Thermolysin Inhibition, PDB code: 3f28:

Zinc binding site 1 out of 1 in 3f28

Go back to Zinc Binding Sites List in 3f28
Zinc binding site 1 out of 1 in the Thermolysin Inhibition


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Thermolysin Inhibition within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn321

b:18.6
occ:1.00
O4 A:S7B5000 2.0 22.5 1.0
NE2 A:HIS142 2.0 17.0 1.0
NE2 A:HIS146 2.0 16.9 1.0
OE2 A:GLU166 2.0 17.3 1.0
O3 A:S7B5000 2.7 25.4 1.0
C2 A:S7B5000 2.7 19.5 1.0
CD A:GLU166 2.8 20.4 1.0
CD2 A:HIS142 3.0 18.3 1.0
CE1 A:HIS146 3.0 15.8 1.0
OE1 A:GLU166 3.0 19.6 1.0
CE1 A:HIS142 3.1 19.1 1.0
CD2 A:HIS146 3.1 24.7 1.0
OH A:TYR157 3.9 24.4 1.0
NE2 A:HIS231 4.1 20.4 1.0
ND1 A:HIS146 4.1 18.4 1.0
C1 A:S7B5000 4.1 18.9 1.0
CG A:HIS142 4.1 19.0 1.0
ND1 A:HIS142 4.1 17.8 1.0
CG A:HIS146 4.2 20.0 1.0
O11 A:S7B5000 4.2 25.0 1.0
CG A:GLU166 4.3 17.1 1.0
O A:HOH1534 4.5 32.5 1.0
CB A:SER169 4.6 20.0 1.0
OE1 A:GLU143 4.6 17.9 1.0
C7 A:S7B5000 4.6 20.6 1.0
CD2 A:HIS231 4.7 18.8 1.0
OG A:SER169 4.9 16.8 1.0
CZ A:TYR157 4.9 22.5 1.0
O6 A:S7B5000 4.9 25.2 1.0
C16 A:S7B5000 4.9 24.5 1.0
CA A:GLU166 5.0 15.6 1.0
CE1 A:TYR157 5.0 21.9 1.0
OE2 A:GLU143 5.0 24.4 1.0
C5 A:S7B5000 5.0 27.1 1.0

Reference:

L.Englert, K.Silber, H.Steuber, S.Brass, B.Over, H.D.Gerber, A.Heine, W.E.Diederich, G.Klebe. Fragment-Based Lead Discovery: Screening and Optimizing Fragments For Thermolysin Inhibition. Chemmedchem V. 5 930 2010.
ISSN: ISSN 1860-7179
PubMed: 20394106
DOI: 10.1002/CMDC.201000084
Page generated: Wed Dec 16 04:17:35 2020

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