Atomistry » Zinc » PDB 3eju-3eyd » 3erz
Atomistry »
  Zinc »
    PDB 3eju-3eyd »
      3erz »

Zinc in PDB 3erz: Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. Mercury Ions on the Three-Fold Channel

Enzymatic activity of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. Mercury Ions on the Three-Fold Channel

All present enzymatic activity of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. Mercury Ions on the Three-Fold Channel:
1.16.3.1;

Protein crystallography data

The structure of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. Mercury Ions on the Three-Fold Channel, PDB code: 3erz was solved by L.Di Costanzo, D.W.Christianson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.80 / 3.06
Space group P 4 21 2
Cell size a, b, c (Å), α, β, γ (°) 170.941, 170.941, 190.144, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 25.6

Other elements in 3erz:

The structure of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. Mercury Ions on the Three-Fold Channel also contains other interesting chemical elements:

Mercury (Hg) 12 atoms
Calcium (Ca) 3 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. Mercury Ions on the Three-Fold Channel (pdb code 3erz). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 5 binding sites of Zinc where determined in the Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. Mercury Ions on the Three-Fold Channel, PDB code: 3erz:
Jump to Zinc binding site number: 1; 2; 3; 4; 5;

Zinc binding site 1 out of 5 in 3erz

Go back to Zinc Binding Sites List in 3erz
Zinc binding site 1 out of 5 in the Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. Mercury Ions on the Three-Fold Channel


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. Mercury Ions on the Three-Fold Channel within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn706

b:15.5
occ:0.25
 NE2 A:HIS173 2.9 36.8 1.0
NE2 D:HIS173 3.0 39.8 1.0
CE1 A:HIS173 3.5 35.9 1.0
CE1 D:HIS173 3.6 37.0 1.0
CD2 A:HIS173 4.0 36.4 1.0
CD2 A:LEU169 4.1 22.6 1.0
CD2 D:HIS173 4.2 35.1 1.0
CD2 D:LEU169 4.3 23.6 1.0
ND1 A:HIS173 4.7 33.7 1.0
ND1 D:HIS173 4.8 31.3 1.0

Zinc binding site 2 out of 5 in 3erz

Go back to Zinc Binding Sites List in 3erz
Zinc binding site 2 out of 5 in the Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. Mercury Ions on the Three-Fold Channel


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. Mercury Ions on the Three-Fold Channel within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn708

b:24.0
occ:0.25
 NE2 B:HIS173 2.5 35.6 1.0
CE1 B:HIS173 2.9 34.3 1.0
CD2 B:HIS173 3.7 34.9 1.0
ND1 B:HIS173 4.1 30.6 1.0
CD2 B:LEU169 4.3 27.8 1.0
CG B:HIS173 4.5 31.4 1.0

Zinc binding site 3 out of 5 in 3erz

Go back to Zinc Binding Sites List in 3erz
Zinc binding site 3 out of 5 in the Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. Mercury Ions on the Three-Fold Channel


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. Mercury Ions on the Three-Fold Channel within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn707

b:20.3
occ:0.25
 NE2 G:HIS173 3.0 32.7 1.0
NE2 J:HIS173 3.1 36.5 1.0
CE1 G:HIS173 3.7 37.5 1.0
CE1 J:HIS173 3.8 36.3 1.0
CD2 G:LEU169 3.9 28.4 1.0
CD2 G:HIS173 4.1 31.8 1.0
CD2 J:LEU169 4.1 25.9 1.0
CD2 J:HIS173 4.3 35.6 1.0
ND1 G:HIS173 4.9 36.8 1.0

Zinc binding site 4 out of 5 in 3erz

Go back to Zinc Binding Sites List in 3erz
Zinc binding site 4 out of 5 in the Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. Mercury Ions on the Three-Fold Channel


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. Mercury Ions on the Three-Fold Channel within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Zn709

b:30.4
occ:0.12
 NE2 H:HIS173 2.7 42.2 1.0
CE1 H:HIS173 3.1 40.8 1.0
CD2 H:HIS173 3.9 40.3 1.0
ND1 H:HIS173 4.4 37.1 1.0
CD2 H:LEU169 4.5 26.1 1.0
CG H:HIS173 4.8 36.6 1.0

Zinc binding site 5 out of 5 in 3erz

Go back to Zinc Binding Sites List in 3erz
Zinc binding site 5 out of 5 in the Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. Mercury Ions on the Three-Fold Channel


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. Mercury Ions on the Three-Fold Channel within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Zn710

b:28.1
occ:0.12
 NE2 I:HIS173 3.2 30.9 1.0
CD2 I:LEU169 3.7 25.2 1.0
CE1 I:HIS173 4.1 30.8 1.0
CD2 I:HIS173 4.1 27.0 1.0
CD1 I:LEU169 4.7 25.3 1.0
CG I:LEU169 4.8 26.0 1.0

Reference:

C.A.Butts, J.Swift, S.G.Kang, L.Di Costanzo, D.W.Christianson, J.G.Saven, I.J.Dmochowski. Directing Noble Metal Ion Chemistry Within A Designed Ferritin Protein. Biochemistry V. 47 12729 2008.
ISSN: ISSN 0006-2960
PubMed: 18991401
DOI: 10.1021/BI8016735
Page generated: Thu Oct 24 12:55:43 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy