Atomistry » Zinc » PDB 3e2d-3eb5 » 3e9x
Atomistry »
  Zinc »
    PDB 3e2d-3eb5 »
      3e9x »

Zinc in PDB 3e9x: Crystal Structure of the Complex of C-Lobe of Lactoferrin with Nimesulide at 2.7 A Resolution

Protein crystallography data

The structure of Crystal Structure of the Complex of C-Lobe of Lactoferrin with Nimesulide at 2.7 A Resolution, PDB code: 3e9x was solved by R.Mir, K.Balaji, G.Vikram, M.Sinha, N.Singh, A.Bhushan, P.Kaur, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 63.570, 50.350, 65.960, 90.00, 107.90, 90.00
R / Rfree (%) 19.7 / 23.5

Other elements in 3e9x:

The structure of Crystal Structure of the Complex of C-Lobe of Lactoferrin with Nimesulide at 2.7 A Resolution also contains other interesting chemical elements:

Iron (Fe) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of the Complex of C-Lobe of Lactoferrin with Nimesulide at 2.7 A Resolution (pdb code 3e9x). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of the Complex of C-Lobe of Lactoferrin with Nimesulide at 2.7 A Resolution, PDB code: 3e9x:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3e9x

Go back to Zinc Binding Sites List in 3e9x
Zinc binding site 1 out of 2 in the Crystal Structure of the Complex of C-Lobe of Lactoferrin with Nimesulide at 2.7 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Complex of C-Lobe of Lactoferrin with Nimesulide at 2.7 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn689

b:44.8
occ:1.00
OE2 A:GLU659 2.4 40.4 1.0
OE1 A:GLU659 2.7 38.6 1.0
CD A:GLU659 2.9 38.8 1.0
O A:GLY653 3.7 45.4 1.0
CG A:GLU659 4.4 38.4 1.0
O A:ARG654 4.4 42.5 1.0
CG2 A:THR656 4.7 34.6 1.0
CA A:PRO655 4.9 36.3 1.0
C A:GLY653 4.9 44.5 1.0
C A:ARG654 5.0 41.0 1.0

Zinc binding site 2 out of 2 in 3e9x

Go back to Zinc Binding Sites List in 3e9x
Zinc binding site 2 out of 2 in the Crystal Structure of the Complex of C-Lobe of Lactoferrin with Nimesulide at 2.7 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Complex of C-Lobe of Lactoferrin with Nimesulide at 2.7 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn690

b:47.1
occ:1.00
NE2 A:HIS588 2.2 34.4 1.0
CD2 A:HIS588 3.1 34.8 1.0
CE1 A:HIS588 3.2 35.2 1.0
O A:HOH789 3.3 54.3 1.0
CG A:HIS588 4.3 34.5 1.0
ND1 A:HIS588 4.3 35.3 1.0
O A:HOH744 4.8 56.5 1.0

Reference:

R.Mir, K.Balaji, G.Vikram, M.Sinha, N.Singh, A.Bhushan, P.Kaur, S.Sharma, T.P.Singh. Crystal Structure of the Complex of C-Lobe of Lactoferrin with Nimesulide at 2.7 A Resolution To Be Published.
Page generated: Wed Dec 16 04:15:18 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy