Zinc in PDB 3dxu: The Crystal Structure of Core JMJD2D Complexed with Fe and N- Oxalylglycine

The structure of The Crystal Structure of Core JMJD2D Complexed with Fe and N- Oxalylglycine, PDB code: 3dxu was solved by Z.Chen, G.Zhang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.95 / 2.20
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	71.543, 71.543, 150.194, 90.00, 90.00, 90.00
R / Rfree (%)	16.8 / 22.1

The structure of The Crystal Structure of Core JMJD2D Complexed with Fe and N- Oxalylglycine also contains other interesting chemical elements:

Iron

(Fe)

1 atom

The binding sites of Zinc atom in the The Crystal Structure of Core JMJD2D Complexed with Fe and N- Oxalylglycine (pdb code 3dxu). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Crystal Structure of Core JMJD2D Complexed with Fe and N- Oxalylglycine, PDB code: 3dxu:

Zinc binding site 1 out of 1 in the The Crystal Structure of Core JMJD2D Complexed with Fe and N- Oxalylglycine


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of Core JMJD2D Complexed with Fe and N- Oxalylglycine within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn350 b:18.4 occ:1.00 SG A:CYS312 0.3 19.9 1.0 NE2 A:HIS244 2.1 16.2 1.0 SG A:CYS238 2.3 20.0 1.0 CB A:CYS312 2.3 6.5 1.0 SG A:CYS310 2.4 6.0 1.0 CE1 A:HIS244 3.0 10.8 1.0 CD2 A:HIS244 3.1 15.0 1.0 CB A:CYS238 3.2 20.3 1.0 CB A:CYS310 3.2 5.6 1.0 CA A:CYS312 3.5 11.0 1.0 N A:CYS312 3.5 9.6 1.0 CA A:CYS310 4.0 8.1 1.0 ND1 A:HIS244 4.1 16.1 1.0 CB A:GLU314 4.1 22.4 1.0 CG A:HIS244 4.2 15.0 1.0 O A:HOH464 4.4 14.9 1.0 N A:SER311 4.4 9.7 1.0 C A:CYS312 4.5 10.6 1.0 C A:CYS310 4.5 8.9 1.0 CA A:CYS238 4.6 20.9 1.0 N A:GLU314 4.6 20.0 1.0 O A:ALA240 4.7 17.8 1.0 N A:ALA315 4.7 24.7 1.0 N A:GLY313 4.7 12.3 1.0 C A:SER311 4.8 10.9 1.0 CA A:PHE241 4.8 16.7 1.0 CA A:GLU314 4.9 21.9 1.0 C A:ALA240 4.9 18.2 1.0

Z.Chen, G.Zhang. The Crystal Structure of Core JMJD2D To Be Published.