Atomistry » Zinc » PDB 3ciz-3cyu » 3cxk
Atomistry »
  Zinc »
    PDB 3ciz-3cyu »
      3cxk »

Zinc in PDB 3cxk: 1.7 A Crystal Structure of Methionine-R-Sulfoxide Reductase From Burkholderia Pseudomallei: Crystallization in A Microfluidic Crystal Card.

Protein crystallography data

The structure of 1.7 A Crystal Structure of Methionine-R-Sulfoxide Reductase From Burkholderia Pseudomallei: Crystallization in A Microfluidic Crystal Card., PDB code: 3cxk was solved by S.Lovell, C.Gerdts, B.Staker, D.Craigen, L.Stewart, Acceleratedtechnologies Center For Gene To 3D Structure (Atcg3D), Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 1.70
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 41.997, 45.171, 45.402, 88.41, 83.73, 69.10
R / Rfree (%) 16.6 / 19.9

Zinc Binding Sites:

The binding sites of Zinc atom in the 1.7 A Crystal Structure of Methionine-R-Sulfoxide Reductase From Burkholderia Pseudomallei: Crystallization in A Microfluidic Crystal Card. (pdb code 3cxk). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the 1.7 A Crystal Structure of Methionine-R-Sulfoxide Reductase From Burkholderia Pseudomallei: Crystallization in A Microfluidic Crystal Card., PDB code: 3cxk:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 3cxk

Go back to Zinc Binding Sites List in 3cxk
Zinc binding site 1 out of 2 in the 1.7 A Crystal Structure of Methionine-R-Sulfoxide Reductase From Burkholderia Pseudomallei: Crystallization in A Microfluidic Crystal Card.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of 1.7 A Crystal Structure of Methionine-R-Sulfoxide Reductase From Burkholderia Pseudomallei: Crystallization in A Microfluidic Crystal Card. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:22.6
occ:1.00
SG A:CYS58 2.3 24.0 1.0
SG A:CYS107 2.3 22.4 1.0
SG A:CYS55 2.3 22.3 1.0
SG A:CYS104 2.4 24.5 1.0
CB A:CYS104 3.1 22.0 1.0
CB A:CYS55 3.2 18.9 1.0
CB A:CYS107 3.3 23.8 1.0
CB A:CYS58 3.3 24.4 1.0
N A:CYS58 3.8 23.5 1.0
N A:CYS107 3.9 24.2 1.0
CA A:CYS58 4.1 23.3 1.0
CA A:CYS107 4.2 23.6 1.0
CB A:VAL57 4.4 23.3 1.0
CB A:ALA109 4.5 20.4 1.0
CB A:GLN106 4.5 27.9 1.0
CA A:CYS104 4.6 21.8 1.0
CA A:CYS55 4.6 20.1 1.0
C A:GLN106 4.8 26.4 1.0
CG1 A:VAL57 4.8 25.1 1.0
C A:VAL57 4.8 24.4 1.0
C A:CYS107 4.8 23.4 1.0
OG1 A:THR60 4.9 25.8 1.0
C A:CYS58 4.9 24.2 1.0
N A:GLY108 4.9 21.5 1.0
CB A:THR60 4.9 23.4 1.0
N A:GLY59 4.9 23.2 1.0
N A:ALA109 4.9 19.7 1.0
CA A:VAL57 5.0 22.7 1.0
N A:VAL57 5.0 21.6 1.0

Zinc binding site 2 out of 2 in 3cxk

Go back to Zinc Binding Sites List in 3cxk
Zinc binding site 2 out of 2 in the 1.7 A Crystal Structure of Methionine-R-Sulfoxide Reductase From Burkholderia Pseudomallei: Crystallization in A Microfluidic Crystal Card.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of 1.7 A Crystal Structure of Methionine-R-Sulfoxide Reductase From Burkholderia Pseudomallei: Crystallization in A Microfluidic Crystal Card. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn201

b:23.0
occ:1.00
SG B:CYS58 2.3 24.8 1.0
SG B:CYS55 2.3 21.6 1.0
SG B:CYS104 2.3 23.4 1.0
SG B:CYS107 2.4 24.2 1.0
CB B:CYS104 3.2 22.1 1.0
CB B:CYS55 3.2 19.0 1.0
CB B:CYS107 3.4 23.8 1.0
CB B:CYS58 3.4 23.8 1.0
N B:CYS107 3.8 25.6 1.0
N B:CYS58 3.8 24.4 1.0
CA B:CYS107 4.1 23.9 1.0
CA B:CYS58 4.2 24.2 1.0
CB B:ALA109 4.4 22.6 1.0
CB B:VAL57 4.5 24.0 1.0
CA B:CYS104 4.6 21.9 1.0
CA B:CYS55 4.6 18.9 1.0
CB B:GLN106 4.7 30.1 1.0
C B:GLN106 4.7 28.1 1.0
C B:CYS107 4.8 24.4 1.0
C B:VAL57 4.8 24.6 1.0
OG1 B:THR60 4.8 26.0 1.0
N B:ALA109 4.9 22.8 1.0
N B:GLY108 4.9 22.4 1.0
C B:CYS58 4.9 25.2 1.0
CB B:THR60 4.9 24.8 1.0
N B:GLY59 5.0 24.0 1.0

Reference:

C.J.Gerdts, M.Elliott, S.Lovell, M.B.Mixon, A.J.Napuli, B.L.Staker, P.Nollert, L.Stewart. The Plug-Based Nanovolume Microcapillary Protein Crystallization System (Mpcs). Acta Crystallogr.,Sect.D V. 64 1116 2008.
ISSN: ISSN 0907-4449
PubMed: 19020349
DOI: 10.1107/S0907444908028060
Page generated: Wed Dec 16 04:11:28 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy