Atomistry » Zinc » PDB 3ciz-3cyu » 3csv
Atomistry »
  Zinc »
    PDB 3ciz-3cyu »
      3csv »

Zinc in PDB 3csv: Crystal Structure of A Putative Aminoglycoside Phosphotransferase (YP_614837.1) From Silicibacter Sp. TM1040 at 2.15 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putative Aminoglycoside Phosphotransferase (YP_614837.1) From Silicibacter Sp. TM1040 at 2.15 A Resolution, PDB code: 3csv was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.74 / 2.15
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 113.680, 55.940, 61.220, 90.00, 102.90, 90.00
R / Rfree (%) 16.8 / 22.8

Other elements in 3csv:

The structure of Crystal Structure of A Putative Aminoglycoside Phosphotransferase (YP_614837.1) From Silicibacter Sp. TM1040 at 2.15 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 1 atom
Sodium (Na) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Putative Aminoglycoside Phosphotransferase (YP_614837.1) From Silicibacter Sp. TM1040 at 2.15 A Resolution (pdb code 3csv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of A Putative Aminoglycoside Phosphotransferase (YP_614837.1) From Silicibacter Sp. TM1040 at 2.15 A Resolution, PDB code: 3csv:

Zinc binding site 1 out of 1 in 3csv

Go back to Zinc Binding Sites List in 3csv
Zinc binding site 1 out of 1 in the Crystal Structure of A Putative Aminoglycoside Phosphotransferase (YP_614837.1) From Silicibacter Sp. TM1040 at 2.15 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Putative Aminoglycoside Phosphotransferase (YP_614837.1) From Silicibacter Sp. TM1040 at 2.15 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn333

b:41.1
occ:0.50
OE2 A:GLU81 2.0 35.7 1.0
NE2 A:HIS83 2.2 36.2 1.0
CD A:GLU81 2.6 38.9 1.0
OE1 A:GLU81 2.7 44.9 1.0
CD2 A:HIS83 2.8 37.5 1.0
CE1 A:HIS83 3.4 37.7 1.0
CG A:GLU81 3.9 32.1 1.0
OE1 A:GLN59 4.0 40.4 1.0
CG A:HIS83 4.1 39.3 1.0
ND1 A:HIS83 4.3 36.8 1.0
NE2 A:GLN59 4.4 29.9 1.0
CB A:GLU81 4.5 32.2 1.0
CD A:GLN59 4.7 39.2 1.0
CG1 A:VAL62 4.7 26.4 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Wed Dec 16 04:11:21 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy