Zinc in PDB 3cp0: Crystal Structure of the Soluble Domain of Membrane Protein Implicated in Regulation of Membrane Protease Activity From Corynebacterium Glutamicum

The structure of Crystal Structure of the Soluble Domain of Membrane Protein Implicated in Regulation of Membrane Protease Activity From Corynebacterium Glutamicum, PDB code: 3cp0 was solved by Y.Kim, C.Tesar, J.Abdullah, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.20 / 1.65
Space group	I 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	42.546, 53.084, 64.357, 90.00, 90.00, 90.00
R / Rfree (%)	17.2 / 21.6

The structure of Crystal Structure of the Soluble Domain of Membrane Protein Implicated in Regulation of Membrane Protease Activity From Corynebacterium Glutamicum also contains other interesting chemical elements:

Chlorine

(Cl)

1 atom

The binding sites of Zinc atom in the Crystal Structure of the Soluble Domain of Membrane Protein Implicated in Regulation of Membrane Protease Activity From Corynebacterium Glutamicum (pdb code 3cp0). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 3 binding sites of Zinc where determined in the Crystal Structure of the Soluble Domain of Membrane Protein Implicated in Regulation of Membrane Protease Activity From Corynebacterium Glutamicum, PDB code: 3cp0:
Jump to Zinc binding site number: 1; 2; 3;

Zinc binding site 1 out of 3 in the Crystal Structure of the Soluble Domain of Membrane Protein Implicated in Regulation of Membrane Protease Activity From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Soluble Domain of Membrane Protein Implicated in Regulation of Membrane Protease Activity From Corynebacterium Glutamicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn101 b:21.6 occ:1.00 OD2 A:ASP42 2.0 21.5 1.0 NE2 A:HIS24 2.0 20.9 1.0 O A:HOH140 2.1 25.0 1.0 CG A:ASP42 2.7 21.7 1.0 OD1 A:ASP42 2.8 18.8 1.0 CD2 A:HIS24 3.0 19.2 1.0 CE1 A:HIS24 3.1 22.2 1.0 O A:HOH154 3.3 43.6 1.0 CD2 A:LEU21 4.0 29.5 1.0 O A:HOH149 4.0 45.2 1.0 O A:HOH155 4.1 45.2 1.0 ND1 A:HIS24 4.2 18.7 1.0 CG A:HIS24 4.2 18.7 1.0 CB A:ASP42 4.2 18.8 1.0 O A:HOH156 4.8 45.5 1.0

Zinc binding site 2 out of 3 in the Crystal Structure of the Soluble Domain of Membrane Protein Implicated in Regulation of Membrane Protease Activity From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of the Soluble Domain of Membrane Protein Implicated in Regulation of Membrane Protease Activity From Corynebacterium Glutamicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn102 b:22.6 occ:0.45 ND1 A:HIS55 2.1 20.2 1.0 O A:HOH153 2.1 18.7 0.5 O A:HOH152 2.4 11.4 0.5 CE1 A:HIS55 3.0 14.1 0.5 CG A:HIS55 3.1 20.9 1.0 CB A:HIS55 3.4 20.1 1.0 O A:HOH135 3.9 36.0 0.5 NE2 A:HIS55 4.1 19.4 1.0 CD2 A:HIS55 4.2 19.5 1.0 CH2 A:TRP76 4.2 20.9 1.0 CA A:HIS55 4.3 20.0 1.0 CE A:LYS77 4.9 21.4 1.0 CZ2 A:TRP76 4.9 20.9 1.0

Zinc binding site 3 out of 3 in the Crystal Structure of the Soluble Domain of Membrane Protein Implicated in Regulation of Membrane Protease Activity From Corynebacterium Glutamicum


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of the Soluble Domain of Membrane Protein Implicated in Regulation of Membrane Protease Activity From Corynebacterium Glutamicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn103 b:39.2 occ:0.35 O A:HOH105 2.0 25.2 0.5 OD2 A:ASP67 2.1 26.9 1.0 O A:HOH146 2.4 52.4 1.0 CG A:ASP67 2.9 23.3 1.0 OD1 A:ASP67 3.2 24.4 1.0 O A:HOH126 3.4 44.8 1.0 CB A:ASP67 4.2 16.6 1.0 NE2 A:GLN69 4.3 33.5 0.5 NE2 A:GLN69 4.4 30.2 0.5 CG A:GLN69 4.7 23.5 0.5 NH2 A:ARG19 4.8 33.1 0.5 CG A:GLN69 4.8 27.1 0.5 CD A:GLN69 4.9 30.3 0.5

Y.Kim, C.Tesar, J.Abdullah, A.Joachimiak. The Crystal Structure of the Soluble Domain of Membrane Protein Implicated in Regulation of Membrane Protease Activity From Corynebacterium Glutamicum. To Be Published.