Atomistry » Zinc » PDB 3ciz-3cyu » 3co0
Atomistry »
  Zinc »
    PDB 3ciz-3cyu »
      3co0 »

Zinc in PDB 3co0: Substrate Complex of Fluoride-Sensitive Engineered Subtilisin SUBT_BACAM

Enzymatic activity of Substrate Complex of Fluoride-Sensitive Engineered Subtilisin SUBT_BACAM

All present enzymatic activity of Substrate Complex of Fluoride-Sensitive Engineered Subtilisin SUBT_BACAM:
3.4.21.62;

Protein crystallography data

The structure of Substrate Complex of Fluoride-Sensitive Engineered Subtilisin SUBT_BACAM, PDB code: 3co0 was solved by D.T.Gallagher, P.N.Bryan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 1.93
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 44.456, 73.060, 95.347, 90.00, 90.00, 90.00
R / Rfree (%) 23 / 28.9

Zinc Binding Sites:

The binding sites of Zinc atom in the Substrate Complex of Fluoride-Sensitive Engineered Subtilisin SUBT_BACAM (pdb code 3co0). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Substrate Complex of Fluoride-Sensitive Engineered Subtilisin SUBT_BACAM, PDB code: 3co0:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 3co0

Go back to Zinc Binding Sites List in 3co0
Zinc binding site 1 out of 4 in the Substrate Complex of Fluoride-Sensitive Engineered Subtilisin SUBT_BACAM


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Substrate Complex of Fluoride-Sensitive Engineered Subtilisin SUBT_BACAM within 5.0Å range:
probe atom residue distance (Å) B Occ
S:Zn278

b:28.4
occ:1.00
O S:VAL174 2.6 8.9 1.0
O S:ALA169 2.7 8.0 1.0
O S:HOH319 2.8 14.3 1.0
O S:TYR171 2.8 12.3 1.0
OD2 S:ASP197 2.9 11.6 1.0
O S:HOH595 2.9 14.3 1.0
O S:GLU195 3.3 10.9 1.0
C S:VAL174 3.7 8.3 1.0
C S:TYR171 3.7 11.4 1.0
CB S:ALA176 3.8 7.8 1.0
CG S:ASP197 3.9 12.4 1.0
C S:ALA169 3.9 8.9 1.0
N S:ALA176 4.0 7.9 1.0
OD1 S:ASP197 4.2 15.4 1.0
C S:LYS170 4.3 9.3 1.0
CA S:PRO172 4.3 12.1 1.0
N S:PRO172 4.3 12.0 1.0
O S:PRO172 4.3 11.4 1.0
C S:GLU195 4.4 12.2 1.0
O S:LYS170 4.4 9.1 1.0
N S:TYR171 4.4 9.0 1.0
NH2 S:ARG247 4.4 14.4 1.0
CA S:VAL174 4.5 9.6 1.0
N S:VAL174 4.5 9.8 1.0
C S:PRO172 4.5 11.8 1.0
CA S:ALA176 4.5 7.1 1.0
CB S:VAL174 4.6 9.3 1.0
CB S:GLU195 4.6 13.4 1.0
CA S:LYS170 4.7 8.7 1.0
C S:ILE175 4.7 6.5 1.0
N S:ILE175 4.7 8.2 1.0
CA S:TYR171 4.7 11.1 1.0
N S:LYS170 4.8 9.0 1.0
CA S:GLU195 4.8 12.8 1.0
CA S:ILE175 4.8 7.8 1.0
CA S:ALA169 4.9 9.0 1.0

Zinc binding site 2 out of 4 in 3co0

Go back to Zinc Binding Sites List in 3co0
Zinc binding site 2 out of 4 in the Substrate Complex of Fluoride-Sensitive Engineered Subtilisin SUBT_BACAM


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Substrate Complex of Fluoride-Sensitive Engineered Subtilisin SUBT_BACAM within 5.0Å range:
probe atom residue distance (Å) B Occ
S:Zn279

b:18.3
occ:1.00
O S:HOH584 2.1 12.5 1.0
ND1 S:HIS238 2.1 10.4 1.0
O S:HOH289 2.3 2.0 1.0
CG S:HIS238 3.1 11.5 1.0
CE1 S:HIS238 3.2 7.4 1.0
CB S:HIS238 3.3 11.6 1.0
CA S:HIS238 3.5 12.7 1.0
NE1 S:TRP241 3.9 11.8 1.0
O S:LYS237 3.9 12.6 1.0
CD2 S:HIS238 4.2 7.2 1.0
NE2 S:HIS238 4.2 9.8 1.0
CD1 S:TRP241 4.3 10.9 1.0
N S:HIS238 4.4 11.9 1.0
C S:HIS238 4.5 13.0 1.0
C S:LYS237 4.5 12.9 1.0
CE2 S:TRP241 4.6 12.4 1.0
CD S:PRO239 4.9 15.0 1.0
N S:PRO239 5.0 14.0 1.0

Zinc binding site 3 out of 4 in 3co0

Go back to Zinc Binding Sites List in 3co0
Zinc binding site 3 out of 4 in the Substrate Complex of Fluoride-Sensitive Engineered Subtilisin SUBT_BACAM


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Substrate Complex of Fluoride-Sensitive Engineered Subtilisin SUBT_BACAM within 5.0Å range:
probe atom residue distance (Å) B Occ
S:Zn280

b:37.2
occ:1.00
ND1 S:HIS39 2.0 26.4 1.0
OD2 S:ASP41 2.7 40.5 1.0
CG S:HIS39 2.9 29.3 1.0
OH S:TYR214 3.0 32.8 1.0
CD S:PRO40 3.0 37.5 1.0
CE1 S:HIS39 3.1 25.2 1.0
CB S:HIS39 3.2 33.0 1.0
CG S:PRO40 3.7 37.8 1.0
CZ S:TYR214 3.8 32.3 1.0
CG S:ASP41 3.9 39.7 1.0
O S:ASP41 3.9 38.4 1.0
N S:PRO40 3.9 37.2 1.0
CA S:HIS39 3.9 33.9 1.0
CG2 S:THR208 4.0 16.5 1.0
CD2 S:HIS39 4.1 26.5 1.0
NE2 S:HIS39 4.1 26.4 1.0
CE1 S:TYR214 4.2 32.8 1.0
C S:HIS39 4.3 35.9 1.0
OD1 S:ASP41 4.5 40.0 1.0
N S:ASP41 4.7 38.3 1.0
CE2 S:TYR214 4.8 33.8 1.0
C S:ASP41 4.8 37.5 1.0
CA S:PRO40 4.9 37.9 1.0

Zinc binding site 4 out of 4 in 3co0

Go back to Zinc Binding Sites List in 3co0
Zinc binding site 4 out of 4 in the Substrate Complex of Fluoride-Sensitive Engineered Subtilisin SUBT_BACAM


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Substrate Complex of Fluoride-Sensitive Engineered Subtilisin SUBT_BACAM within 5.0Å range:
probe atom residue distance (Å) B Occ
S:Zn281

b:26.5
occ:1.00
ND1 S:HIS17 2.1 12.2 1.0
CG S:HIS17 3.1 9.9 1.0
CE1 S:HIS17 3.1 12.8 1.0
CB S:HIS17 3.3 9.7 1.0
NE2 S:HIS17 4.2 8.6 1.0
CD2 S:HIS17 4.2 11.6 1.0
CA S:PRO14 4.6 13.5 1.0
CB S:PRO14 4.8 14.1 1.0
CA S:HIS17 4.9 9.9 1.0

Reference:

T.Gallagher, B.Ruan, M.London, M.A.Bryan, P.N.Bryan. Structure of A Switchable Subtilisin Complexed with A Substrate and with the Activator Azide. Biochemistry V. 48 10389 2009.
ISSN: ISSN 0006-2960
PubMed: 19761257
DOI: 10.1021/BI900577N
Page generated: Thu Oct 24 11:52:59 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy