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Zinc in PDB 3ch5: The Crystal Structure of the Rangdp-NUP153ZNF2 Complex

Protein crystallography data

The structure of The Crystal Structure of the Rangdp-NUP153ZNF2 Complex, PDB code: 3ch5 was solved by I.R.Vetter, N.Schrader, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.76 / 2.10
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 69.700, 75.350, 123.050, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 23.4

Other elements in 3ch5:

The structure of The Crystal Structure of the Rangdp-NUP153ZNF2 Complex also contains other interesting chemical elements:

Magnesium (Mg) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the The Crystal Structure of the Rangdp-NUP153ZNF2 Complex (pdb code 3ch5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Crystal Structure of the Rangdp-NUP153ZNF2 Complex, PDB code: 3ch5:

Zinc binding site 1 out of 1 in 3ch5

Go back to Zinc Binding Sites List in 3ch5
Zinc binding site 1 out of 1 in the The Crystal Structure of the Rangdp-NUP153ZNF2 Complex


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Crystal Structure of the Rangdp-NUP153ZNF2 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn800

b:44.8
occ:1.00
SG B:CYS727 2.2 31.3 1.0
SG B:CYS730 2.4 36.5 1.0
SG B:CYS741 2.4 34.5 1.0
SG B:CYS744 2.4 32.4 1.0
CB B:CYS741 3.0 35.3 1.0
CB B:CYS727 3.1 32.2 1.0
CB B:CYS730 3.2 34.0 1.0
CB B:CYS744 3.3 33.9 1.0
N B:CYS744 3.9 34.0 1.0
N B:CYS730 3.9 34.5 1.0
CA B:CYS730 4.1 35.2 1.0
CA B:CYS744 4.1 34.0 1.0
CB B:THR729 4.4 34.1 1.0
CA B:CYS741 4.5 35.2 1.0
CA B:CYS727 4.6 32.3 1.0
N B:VAL732 4.7 33.8 1.0
C B:THR729 4.7 33.9 1.0
CB B:VAL732 4.7 34.6 1.0
C B:CYS744 4.8 34.5 1.0
OG1 B:THR746 4.9 36.2 1.0
CB B:ALA743 4.9 33.5 1.0
CB B:THR746 4.9 35.9 1.0
C B:CYS730 4.9 34.7 1.0
CA B:THR729 4.9 33.8 1.0
C B:ALA743 4.9 34.2 1.0
N B:THR729 5.0 33.3 1.0
N B:GLU745 5.0 35.0 1.0
C B:CYS741 5.0 35.3 1.0

Reference:

N.Schrader, C.Koerner, K.Koessmeier, J.A.Bangert, A.Wittinghofer, R.Stoll, I.R.Vetter. The Crystal Structure of the Ran-NUP153ZNF2 Complex: A General Ran Docking Site at the Nuclear Pore Complex Structure V. 16 1116 2008.
ISSN: ISSN 0969-2126
PubMed: 18611384
DOI: 10.1016/J.STR.2008.03.014
Page generated: Wed Dec 16 04:10:38 2020

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