Zinc in PDB 3c9f: Crystal Structure of 5'-Nucleotidase From Candida Albicans SC5314

The structure of Crystal Structure of 5'-Nucleotidase From Candida Albicans SC5314, PDB code: 3c9f was solved by Y.Patskovsky, R.Romero, M.Gilmore, M.Eberle, K.Bain, D.Smith, S.R.Wasserman, J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Researchcenter For Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 1.90
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	103.946, 106.740, 150.656, 90.00, 90.00, 90.00
R / Rfree (%)	18.6 / 22.5

The structure of Crystal Structure of 5'-Nucleotidase From Candida Albicans SC5314 also contains other interesting chemical elements:

Sodium

(Na)

4 atoms

The binding sites of Zinc atom in the Crystal Structure of 5'-Nucleotidase From Candida Albicans SC5314 (pdb code 3c9f). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of 5'-Nucleotidase From Candida Albicans SC5314, PDB code: 3c9f:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of 5'-Nucleotidase From Candida Albicans SC5314


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of 5'-Nucleotidase From Candida Albicans SC5314 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn601 b:32.8 occ:1.00 OD2 A:ASP80 2.1 25.0 1.0 O A:HOH975 2.2 10.5 0.5 O2 A:FMT607 2.3 27.1 1.0 OD1 A:ASN114 2.3 27.3 1.0 NE2 A:HIS217 2.3 22.6 1.0 ND1 A:HIS249 2.4 23.5 1.0 O A:HOH975 3.1 14.9 0.5 CG A:ASP80 3.1 20.8 1.0 CE1 A:HIS249 3.2 24.2 1.0 CE1 A:HIS217 3.3 24.5 1.0 CG A:ASN114 3.3 28.2 1.0 CD2 A:HIS217 3.3 23.2 1.0 C A:FMT607 3.4 26.3 1.0 CG A:HIS249 3.5 28.4 1.0 OD1 A:ASP80 3.6 26.5 1.0 ND2 A:ASN114 3.7 23.0 1.0 OD1 A:ASP34 3.8 43.6 1.0 CA A:HIS249 3.8 29.5 1.0 CB A:HIS249 3.9 21.6 1.0 O1 A:FMT607 4.1 36.5 1.0 O A:HIS249 4.1 32.4 1.0 CD2 A:HIS115 4.2 21.6 1.0 CB A:ASP80 4.3 23.6 1.0 ND1 A:HIS217 4.4 24.4 1.0 NE2 A:HIS249 4.4 26.3 1.0 CG A:HIS217 4.4 21.3 1.0 C A:HIS249 4.5 28.5 1.0 N A:ASN114 4.6 24.2 1.0 CD2 A:HIS249 4.6 24.7 1.0 CB A:ASN114 4.6 18.5 1.0 NE2 A:HIS115 4.8 26.8 1.0 CE2 A:PHE178 4.8 23.0 1.0 N A:HIS249 4.8 26.1 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of 5'-Nucleotidase From Candida Albicans SC5314


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of 5'-Nucleotidase From Candida Albicans SC5314 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn601 b:33.0 occ:1.00 O1 B:FMT607 2.2 33.2 1.0 OD2 B:ASP80 2.2 26.2 1.0 NE2 B:HIS217 2.3 19.8 1.0 OD1 B:ASN114 2.3 23.8 1.0 ND1 B:HIS249 2.4 19.9 1.0 O B:HOH1055 2.4 8.4 0.5 O B:HOH1055 2.9 8.6 0.5 CG B:ASP80 3.2 29.8 1.0 CE1 B:HIS249 3.2 19.3 1.0 CD2 B:HIS217 3.3 24.6 1.0 C B:FMT607 3.3 37.5 1.0 CE1 B:HIS217 3.3 18.8 1.0 CG B:ASN114 3.3 27.1 1.0 CG B:HIS249 3.5 23.1 1.0 OD1 B:ASP80 3.7 27.9 1.0 ND2 B:ASN114 3.7 21.8 1.0 CA B:HIS249 3.8 22.7 1.0 OD1 B:ASP34 3.8 38.0 1.0 CB B:HIS249 3.9 20.3 1.0 O2 B:FMT607 4.0 38.9 1.0 O B:HIS249 4.1 25.3 1.0 CD2 B:HIS115 4.1 24.7 1.0 CB B:ASP80 4.3 22.8 1.0 NE2 B:HIS249 4.4 21.6 1.0 ND1 B:HIS217 4.4 22.0 1.0 CG B:HIS217 4.4 21.3 1.0 C B:HIS249 4.4 22.8 1.0 N B:ASN114 4.5 23.3 1.0 CD2 B:HIS249 4.6 17.8 1.0 CE2 B:PHE178 4.6 23.6 1.0 CB B:ASN114 4.7 25.8 1.0 NE2 B:HIS115 4.8 26.6 1.0 N B:HIS249 4.8 18.7 1.0 CG B:ASP34 5.0 25.8 1.0

Y.Patskovsky, R.Romero, M.Gilmore, M.Eberle, K.Bain, D.Smith, S.R.Wasserman, J.M.Sauder, S.K.Burley, S.C.Almo. Crystal Structure of 5'-Nucleotidase From Candida Albicans. To Be Published.