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Zinc in PDB 3b8y: Crystal Structure of Pectate Lyase Peli From Erwinia Chrysanthemi in Complex with Tetragalacturonic Acid

Enzymatic activity of Crystal Structure of Pectate Lyase Peli From Erwinia Chrysanthemi in Complex with Tetragalacturonic Acid

All present enzymatic activity of Crystal Structure of Pectate Lyase Peli From Erwinia Chrysanthemi in Complex with Tetragalacturonic Acid:
4.2.2.2;

Protein crystallography data

The structure of Crystal Structure of Pectate Lyase Peli From Erwinia Chrysanthemi in Complex with Tetragalacturonic Acid, PDB code: 3b8y was solved by C.Creze, S.Castang, E.Derivery, R.Haser, V.Shevchik, P.Gouet, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.37 / 2.30
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 61.150, 68.680, 73.360, 90.00, 113.98, 90.00
R / Rfree (%) 19.8 / 25.3

Other elements in 3b8y:

The structure of Crystal Structure of Pectate Lyase Peli From Erwinia Chrysanthemi in Complex with Tetragalacturonic Acid also contains other interesting chemical elements:

Calcium (Ca) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Pectate Lyase Peli From Erwinia Chrysanthemi in Complex with Tetragalacturonic Acid (pdb code 3b8y). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Pectate Lyase Peli From Erwinia Chrysanthemi in Complex with Tetragalacturonic Acid, PDB code: 3b8y:

Zinc binding site 1 out of 1 in 3b8y

Go back to Zinc Binding Sites List in 3b8y
Zinc binding site 1 out of 1 in the Crystal Structure of Pectate Lyase Peli From Erwinia Chrysanthemi in Complex with Tetragalacturonic Acid


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Pectate Lyase Peli From Erwinia Chrysanthemi in Complex with Tetragalacturonic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn711

b:47.9
occ:1.00
 OD2 B:ASP178 2.1 39.1 1.0
ND1 B:HIS176 2.5 34.7 1.0
OD1 B:ASP178 2.7 40.7 1.0
CG B:ASP178 2.7 39.9 1.0
CB A:SER147 3.1 68.9 1.0
OD1 A:ASP146 3.3 67.4 1.0
N A:SER147 3.3 67.2 1.0
CG B:HIS176 3.4 34.0 1.0
CE1 B:HIS176 3.5 33.2 1.0
CA A:SER147 3.5 68.3 1.0
CB B:HIS176 3.5 35.4 1.0
CB A:ASP146 3.9 66.7 1.0
OG A:SER147 3.9 70.8 1.0
CG A:ASP146 4.0 68.3 1.0
OD1 B:ASN200 4.0 37.2 1.0
CB B:ASP178 4.2 39.3 1.0
C A:ASP146 4.3 66.2 1.0
CG B:PRO152 4.4 52.0 1.0
O B:HOH1109 4.5 40.6 1.0
CG1 B:ILE155 4.5 46.5 1.0
CD2 B:HIS176 4.5 33.5 1.0
NE2 B:HIS176 4.5 35.6 1.0
CA A:ASP146 4.7 65.3 1.0
CB B:PRO152 4.9 52.5 1.0
CA B:HIS176 4.9 35.6 1.0

Reference:

C.Creze, S.Castang, E.Derivery, R.Haser, N.Hugouvieux-Cotte-Pattat, V.E.Shevchik, P.Gouet. The Crystal Structure of Pectate Lyase Peli From Soft Rot Pathogen Erwinia Chrysanthemi in Complex with Its Substrate J.Biol.Chem. V. 283 18260 2008.
ISSN: ISSN 0021-9258
PubMed: 18430740
DOI: 10.1074/JBC.M709931200
Page generated: Thu Oct 24 11:27:56 2024

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