Zinc in PDB 3b5q: Crystal Structure of A Putative Sulfatase (NP_810509.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.40 A Resolution

The structure of Crystal Structure of A Putative Sulfatase (NP_810509.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.40 A Resolution, PDB code: 3b5q was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.91 / 2.40
Space group	P 41
Cell size a, b, c (Å), α, β, γ (°)	106.275, 106.275, 111.680, 90.00, 90.00, 90.00
R / Rfree (%)	14.9 / 20.6

The structure of Crystal Structure of A Putative Sulfatase (NP_810509.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.40 A Resolution also contains other interesting chemical elements:

Chlorine

(Cl)

2 atoms

The binding sites of Zinc atom in the Crystal Structure of A Putative Sulfatase (NP_810509.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.40 A Resolution (pdb code 3b5q). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of A Putative Sulfatase (NP_810509.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.40 A Resolution, PDB code: 3b5q:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of A Putative Sulfatase (NP_810509.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.40 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Putative Sulfatase (NP_810509.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.40 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn500 b:41.5 occ:1.00 ND1 A:HIS469 2.0 30.0 1.0 NE2 A:HIS462 2.2 50.5 1.0 SG A:CYS226 2.3 33.6 1.0 SG A:CYS225 2.4 38.9 1.0 CE1 A:HIS469 2.9 27.4 1.0 CD2 A:HIS462 3.1 46.1 1.0 CG A:HIS469 3.1 30.6 1.0 CE1 A:HIS462 3.2 51.0 1.0 N A:CYS226 3.4 39.4 1.0 CB A:CYS225 3.4 35.9 1.0 C A:CYS225 3.5 34.8 1.0 CB A:HIS469 3.5 44.4 1.0 CB A:CYS226 3.6 38.4 1.0 CA A:CYS226 3.8 40.6 1.0 O A:CYS225 3.9 43.2 1.0 CA A:HIS469 4.0 45.5 1.0 CA A:CYS225 4.0 32.9 1.0 NE2 A:HIS469 4.1 43.4 1.0 CD2 A:HIS469 4.2 30.6 1.0 CG A:HIS462 4.3 57.9 1.0 ND1 A:HIS462 4.3 60.5 1.0 CD1 A:TYR223 4.3 35.7 1.0 O A:HOH626 4.6 39.7 1.0 N A:CYS225 4.6 36.6 1.0 N A:GLU470 4.7 45.2 1.0 O A:TYR223 4.9 38.9 1.0 CA A:TYR223 4.9 34.3 1.0 C A:HIS469 4.9 44.1 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of A Putative Sulfatase (NP_810509.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.40 A Resolution


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Putative Sulfatase (NP_810509.1) From Bacteroides Thetaiotaomicron Vpi-5482 at 2.40 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn500 b:35.2 occ:1.00 ND1 B:HIS469 2.0 16.1 1.0 SG B:CYS226 2.2 29.1 1.0 NE2 B:HIS462 2.2 46.7 1.0 SG B:CYS225 2.5 30.1 1.0 CE1 B:HIS469 2.8 39.5 1.0 CD2 B:HIS462 3.1 40.0 1.0 CG B:HIS469 3.1 17.1 1.0 CE1 B:HIS462 3.2 50.6 1.0 N B:CYS226 3.3 32.9 1.0 CB B:CYS226 3.5 32.3 1.0 CB B:CYS225 3.5 32.3 1.0 C B:CYS225 3.6 29.5 1.0 CB B:HIS469 3.6 29.4 1.0 CA B:CYS226 3.7 30.2 1.0 NE2 B:HIS469 4.0 15.1 1.0 CA B:HIS469 4.1 34.4 1.0 CA B:CYS225 4.1 32.9 1.0 O B:CYS225 4.1 38.1 1.0 CD2 B:HIS469 4.1 17.9 1.0 CG B:HIS462 4.2 39.6 1.0 CD1 B:TYR223 4.3 25.9 1.0 ND1 B:HIS462 4.3 40.6 1.0 N B:CYS225 4.7 30.1 1.0 O B:TYR223 4.7 23.7 1.0 O B:HOH596 4.7 21.5 1.0 N B:GLU470 4.8 39.3 1.0 CE1 B:TYR223 4.9 29.3 1.0 C B:HIS469 4.9 33.2 1.0 CA B:TYR223 5.0 28.8 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.