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Zinc in PDB 3anv: Crystal Structure of D-Serine Dehydratase From Chicken Kidney (2,3-Dap Complex)

Enzymatic activity of Crystal Structure of D-Serine Dehydratase From Chicken Kidney (2,3-Dap Complex)

All present enzymatic activity of Crystal Structure of D-Serine Dehydratase From Chicken Kidney (2,3-Dap Complex):
4.3.1.18;

Protein crystallography data

The structure of Crystal Structure of D-Serine Dehydratase From Chicken Kidney (2,3-Dap Complex), PDB code: 3anv was solved by H.Tanaka, M.Senda, N.Venugopalan, A.Yamamoto, T.Senda, T.Ishida, K.Horiike, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 17.00 / 2.09
Space group P 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 104.712, 104.712, 81.879, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 23.4

Other elements in 3anv:

The structure of Crystal Structure of D-Serine Dehydratase From Chicken Kidney (2,3-Dap Complex) also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of D-Serine Dehydratase From Chicken Kidney (2,3-Dap Complex) (pdb code 3anv). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of D-Serine Dehydratase From Chicken Kidney (2,3-Dap Complex), PDB code: 3anv:

Zinc binding site 1 out of 1 in 3anv

Go back to Zinc Binding Sites List in 3anv
Zinc binding site 1 out of 1 in the Crystal Structure of D-Serine Dehydratase From Chicken Kidney (2,3-Dap Complex)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of D-Serine Dehydratase From Chicken Kidney (2,3-Dap Complex) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn451

b:37.2
occ:0.50
 O A:HOH584 2.1 31.5 0.5
NE2 A:HIS347 2.2 33.0 1.0
O A:HOH583 2.2 28.0 0.5
SG A:CYS349 2.4 33.2 1.0
O A:HOH572 2.4 41.3 1.0
O A:HOH583 2.6 29.6 0.5
CE1 A:HIS347 3.1 31.0 1.0
CD2 A:HIS347 3.1 30.9 1.0
OXT A:2RA455 3.3 56.2 1.0
CB A:CYS349 3.3 25.0 1.0
O2P A:PLP401 4.1 33.9 1.0
ND1 A:HIS347 4.2 33.2 1.0
CG A:HIS347 4.3 28.5 1.0
C A:2RA455 4.5 55.6 1.0
CA A:CYS349 4.6 24.7 1.0
N A:CYS349 4.7 23.3 1.0
O A:HOH512 4.7 32.7 1.0
ND2 A:ASN242 4.7 28.8 1.0
O A:HOH585 5.0 27.8 0.5
NZ A:LYS45 5.0 42.3 1.0

Reference:

H.Tanaka, M.Senda, N.Venugopalan, A.Yamamoto, T.Senda, T.Ishida, K.Horiike. Crystal Structure of A Zinc-Dependent D-Serine Dehydratase From Chicken Kidney J.Biol.Chem. V. 286 27548 2011.
ISSN: ISSN 0021-9258
PubMed: 21676877
DOI: 10.1074/JBC.M110.201160
Page generated: Wed Dec 16 04:07:21 2020

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