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Zinc in PDB 3ad8: Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Pyrrole 2-Carboxylate

Enzymatic activity of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Pyrrole 2-Carboxylate

All present enzymatic activity of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Pyrrole 2-Carboxylate:
1.5.3.1;

Protein crystallography data

The structure of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Pyrrole 2-Carboxylate, PDB code: 3ad8 was solved by H.Suzuki, T.Moriguchi, K.Ida, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 61.31 / 2.20
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 198.796, 198.796, 196.819, 90.00, 90.00, 120.00
R / Rfree (%) 16.1 / 20.6

Zinc Binding Sites:

The binding sites of Zinc atom in the Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Pyrrole 2-Carboxylate (pdb code 3ad8). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Pyrrole 2-Carboxylate, PDB code: 3ad8:

Zinc binding site 1 out of 1 in 3ad8

Go back to Zinc Binding Sites List in 3ad8
Zinc binding site 1 out of 1 in the Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Pyrrole 2-Carboxylate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Pyrrole 2-Carboxylate within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn100

b:19.0
occ:1.00
 ND1 D:HIS59 2.2 14.2 1.0
SG D:CYS9 2.3 19.3 1.0
SG D:CYS63 2.3 19.4 1.0
SG D:CYS6 2.3 18.6 1.0
CE1 D:HIS59 3.1 16.7 1.0
CG D:HIS59 3.1 18.3 1.0
CB D:CYS9 3.3 17.9 1.0
CB D:CYS63 3.3 18.1 1.0
CB D:CYS6 3.4 17.4 1.0
CB D:HIS59 3.4 17.0 1.0
N D:CYS63 3.6 19.4 1.0
N D:CYS9 3.7 18.8 1.0
CB D:ASN8 4.1 19.4 1.0
CA D:CYS63 4.1 19.1 1.0
CA D:CYS9 4.1 18.5 1.0
NE2 D:HIS59 4.3 11.9 1.0
CD2 D:HIS59 4.3 18.1 1.0
C D:ASN8 4.5 18.6 1.0
CA D:ASN8 4.7 19.7 1.0
ND2 D:ASN8 4.7 19.3 1.0
C D:GLY62 4.7 19.3 1.0
N D:ASN8 4.8 20.1 1.0
O C:HOH213 4.8 16.3 1.0
CA D:CYS6 4.8 19.1 1.0
CA D:GLY62 4.9 19.3 1.0
C D:CYS63 4.9 19.3 1.0
CG D:ASN8 4.9 21.3 1.0
CA D:HIS59 5.0 18.2 1.0
N D:ARG64 5.0 18.8 1.0

Reference:

T.Moriguchi, K.Ida, T.Hikima, G.Ueno, M.Yamamoto, H.Suzuki. Channeling and Conformational Changes in the Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96. J.Biochem. V. 148 491 2010.
ISSN: ISSN 0021-924X
PubMed: 20675294
DOI: 10.1093/JB/MVQ083
Page generated: Wed Dec 16 04:06:46 2020

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