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Zinc in PDB 3ad7: Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Methylthio Acetate

Enzymatic activity of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Methylthio Acetate

All present enzymatic activity of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Methylthio Acetate:
1.5.3.1;

Protein crystallography data

The structure of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Methylthio Acetate, PDB code: 3ad7 was solved by H.Suzuki, T.Moriguchi, K.Ida, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.53 / 2.20
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 198.949, 198.949, 196.765, 90.00, 90.00, 120.00
R / Rfree (%) 17 / 20.5

Zinc Binding Sites:

The binding sites of Zinc atom in the Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Methylthio Acetate (pdb code 3ad7). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Methylthio Acetate, PDB code: 3ad7:

Zinc binding site 1 out of 1 in 3ad7

Go back to Zinc Binding Sites List in 3ad7
Zinc binding site 1 out of 1 in the Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Methylthio Acetate


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96 in Complex with Methylthio Acetate within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn100

b:21.1
occ:1.00
 ND1 D:HIS59 2.2 17.5 1.0
SG D:CYS6 2.3 20.2 1.0
SG D:CYS63 2.3 20.8 1.0
SG D:CYS9 2.3 21.6 1.0
CE1 D:HIS59 3.2 20.3 1.0
CG D:HIS59 3.2 19.9 1.0
CB D:CYS9 3.2 20.0 1.0
CB D:CYS63 3.3 21.1 1.0
CB D:CYS6 3.4 18.6 1.0
CB D:HIS59 3.5 19.4 1.0
N D:CYS63 3.6 21.4 1.0
N D:CYS9 3.8 20.7 1.0
CB D:ASN8 4.1 21.2 1.0
CA D:CYS63 4.1 21.5 1.0
CA D:CYS9 4.1 20.6 1.0
NE2 D:HIS59 4.3 18.7 1.0
CD2 D:HIS59 4.3 19.6 1.0
ND2 D:ASN8 4.6 20.5 1.0
C D:ASN8 4.6 20.9 1.0
CA D:ASN8 4.7 21.2 1.0
C D:GLY62 4.7 20.8 1.0
N D:ASN8 4.8 21.3 1.0
CA D:CYS6 4.8 20.1 1.0
O C:HOH226 4.8 18.7 1.0
CG D:ASN8 4.9 22.2 1.0
CA D:GLY62 4.9 20.9 1.0
C D:CYS63 5.0 21.7 1.0
CA D:HIS59 5.0 20.9 1.0

Reference:

T.Moriguchi, K.Ida, T.Hikima, G.Ueno, M.Yamamoto, H.Suzuki. Channeling and Conformational Changes in the Heterotetrameric Sarcosine Oxidase From Corynebacterium Sp. U-96. J.Biochem. V. 148 491 2010.
ISSN: ISSN 0021-924X
PubMed: 20675294
DOI: 10.1093/JB/MVQ083
Page generated: Wed Dec 16 04:06:46 2020

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