Zinc in PDB 3a9k: Crystal Structure of the Mouse TAB3-Nzf in Complex with LYS63-Linked Di-Ubiquitin

The structure of Crystal Structure of the Mouse TAB3-Nzf in Complex with LYS63-Linked Di-Ubiquitin, PDB code: 3a9k was solved by Y.Sato, A.Yoshikawa, M.Yamashita, A.Yamagata, S.Fukai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.72 / 1.40
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	29.900, 71.018, 71.562, 90.00, 90.00, 90.00
R / Rfree (%)	18.7 / 21.8

The binding sites of Zinc atom in the Crystal Structure of the Mouse TAB3-Nzf in Complex with LYS63-Linked Di-Ubiquitin (pdb code 3a9k). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of the Mouse TAB3-Nzf in Complex with LYS63-Linked Di-Ubiquitin, PDB code: 3a9k:

Zinc binding site 1 out of 1 in the Crystal Structure of the Mouse TAB3-Nzf in Complex with LYS63-Linked Di-Ubiquitin


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of the Mouse TAB3-Nzf in Complex with LYS63-Linked Di-Ubiquitin within 5.0Å range: probe atom residue distance (Å) B Occ C:Zn1 b:12.3 occ:1.00 SG C:CYS696 2.3 9.6 1.0 SG C:CYS710 2.3 14.6 1.0 SG C:CYS693 2.4 11.9 1.0 SG C:CYS707 2.4 11.3 1.0 CB C:CYS707 3.1 12.2 1.0 CB C:CYS693 3.1 12.1 1.0 CB C:CYS710 3.3 15.3 1.0 CB C:CYS696 3.4 10.3 1.0 N C:CYS710 3.8 14.9 1.0 N C:CYS696 3.8 11.7 1.0 CA C:CYS710 4.1 15.7 1.0 CA C:CYS696 4.1 10.0 1.0 CB C:GLN709 4.5 13.6 1.0 CA C:CYS707 4.6 12.8 1.0 CA C:CYS693 4.6 11.7 1.0 CB C:PHE698 4.7 8.5 1.0 CB C:SER695 4.7 16.1 1.0 C C:CYS710 4.7 17.3 1.0 C C:CYS696 4.8 9.5 1.0 C C:GLN709 4.8 14.3 1.0 O C:HOH22 4.9 17.7 1.0 N C:PHE698 4.9 8.4 1.0 N C:THR697 4.9 8.6 1.0 C C:SER695 4.9 14.0 1.0 N C:GLU711 4.9 18.2 1.0 N C:GLN709 5.0 13.0 1.0

Y.Sato, A.Yoshikawa, M.Yamashita, A.Yamagata, S.Fukai. Structural Basis For Specific Recognition of Lys 63-Linked Polyubiquitin Chains By Nzf Domains of TAB2 and TAB3 Embo J. V. 28 3903 2009.
ISSN: ISSN 0261-4189
PubMed: 19927120
DOI: 10.1038/EMBOJ.2009.345