Zinc in PDB 2zae: Crystal Structure of Protein PH1601P in Complex with Protein PH1771P of Archaeal Ribonuclease P From Pyrococcus Horikoshii OT3

All present enzymatic activity of Crystal Structure of Protein PH1601P in Complex with Protein PH1771P of Archaeal Ribonuclease P From Pyrococcus Horikoshii OT3:
3.1.26.5;

The structure of Crystal Structure of Protein PH1601P in Complex with Protein PH1771P of Archaeal Ribonuclease P From Pyrococcus Horikoshii OT3, PDB code: 2zae was solved by T.Honda, Y.Kakuta, M.Kimura, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.64 / 2.21
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	74.829, 127.070, 51.857, 90.00, 90.00, 90.00
R / Rfree (%)	19.9 / 25

The binding sites of Zinc atom in the Crystal Structure of Protein PH1601P in Complex with Protein PH1771P of Archaeal Ribonuclease P From Pyrococcus Horikoshii OT3 (pdb code 2zae). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of Protein PH1601P in Complex with Protein PH1771P of Archaeal Ribonuclease P From Pyrococcus Horikoshii OT3, PDB code: 2zae:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Crystal Structure of Protein PH1601P in Complex with Protein PH1771P of Archaeal Ribonuclease P From Pyrococcus Horikoshii OT3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Protein PH1601P in Complex with Protein PH1771P of Archaeal Ribonuclease P From Pyrococcus Horikoshii OT3 within 5.0Å range: probe atom residue distance (Å) B Occ B:Zn121 b:36.4 occ:1.00 SG B:CYS68 2.3 31.6 1.0 SG B:CYS100 2.3 26.5 1.0 SG B:CYS97 2.3 27.4 1.0 SG B:CYS71 2.3 33.3 1.0 CB B:CYS97 3.1 29.1 1.0 CB B:CYS68 3.1 32.9 1.0 CB B:CYS71 3.3 32.9 1.0 CB B:CYS100 3.3 28.1 1.0 N B:CYS71 3.7 33.7 1.0 N B:CYS100 3.9 29.4 1.0 CA B:CYS71 4.0 33.5 1.0 CA B:CYS100 4.1 28.6 1.0 CB B:TYR102 4.4 31.0 1.0 CA B:CYS97 4.5 28.8 1.0 CA B:CYS68 4.6 33.0 1.0 OG1 B:THR73 4.6 39.6 1.0 CB B:ARG70 4.6 33.6 1.0 CB B:THR73 4.7 36.9 1.0 N B:GLY101 4.7 28.8 1.0 N B:TYR102 4.7 30.3 1.0 C B:CYS100 4.8 28.8 1.0 C B:CYS71 4.8 34.0 1.0 C B:ARG70 4.8 33.3 1.0 C B:GLU99 4.9 30.0 1.0 CG B:ARG70 4.9 35.0 1.0 N B:HIS72 5.0 34.5 1.0 CB B:GLU99 5.0 31.1 1.0 O B:CYS97 5.0 29.6 1.0 C B:CYS97 5.0 29.4 1.0

Zinc binding site 2 out of 2 in the Crystal Structure of Protein PH1601P in Complex with Protein PH1771P of Archaeal Ribonuclease P From Pyrococcus Horikoshii OT3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Protein PH1601P in Complex with Protein PH1771P of Archaeal Ribonuclease P From Pyrococcus Horikoshii OT3 within 5.0Å range: probe atom residue distance (Å) B Occ D:Zn121 b:31.9 occ:1.00 SG D:CYS71 2.2 22.9 1.0 SG D:CYS100 2.3 31.6 1.0 SG D:CYS68 2.3 26.5 1.0 SG D:CYS97 2.4 30.3 1.0 CB D:CYS68 3.1 27.1 1.0 CB D:CYS97 3.2 31.0 1.0 CB D:CYS71 3.3 24.9 1.0 CB D:CYS100 3.3 31.1 1.0 N D:CYS71 3.7 25.2 1.0 N D:CYS100 3.9 31.1 1.0 CA D:CYS71 4.1 24.4 1.0 CA D:CYS100 4.1 30.6 1.0 CB D:TYR102 4.3 31.7 1.0 CG2 D:THR73 4.5 27.7 1.0 CA D:CYS68 4.5 27.0 1.0 CA D:CYS97 4.7 30.8 1.0 C D:CYS100 4.7 31.1 1.0 N D:GLY101 4.7 31.5 1.0 N D:TYR102 4.7 31.6 1.0 CB D:GLU99 4.7 30.9 1.0 CB D:ARG70 4.8 25.6 1.0 C D:GLU99 4.8 30.4 1.0 C D:CYS71 4.8 25.3 1.0 C D:ARG70 4.8 25.3 1.0 N D:HIS72 4.9 26.0 1.0

T.Honda, Y.Kakuta, K.Kimura, J.Saho, M.Kimura. Structure of An Archaeal Homolog of the Human Protein Complex RPP21-RPP29 That Is A Key Core Component For the Assembly of Active Ribonuclease P. J.Mol.Biol. V. 384 652 2008.
ISSN: ISSN 0022-2836
PubMed: 18929577
DOI: 10.1016/J.JMB.2008.09.056