Atomistry » Zinc » PDB 2yqm-2yts » 2yt5
Atomistry »
  Zinc »
    PDB 2yqm-2yts »
      2yt5 »

Zinc in PDB 2yt5: Solution Structure of the Phd Domain of Metal-Response Element-Binding Transcription Factor 2

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the Phd Domain of Metal-Response Element-Binding Transcription Factor 2 (pdb code 2yt5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Phd Domain of Metal-Response Element-Binding Transcription Factor 2, PDB code: 2yt5:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2yt5

Go back to Zinc Binding Sites List in 2yt5
Zinc binding site 1 out of 2 in the Solution Structure of the Phd Domain of Metal-Response Element-Binding Transcription Factor 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Phd Domain of Metal-Response Element-Binding Transcription Factor 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn201

b:0.0
occ:1.00
ND1 A:HIS34 2.1 0.0 1.0
SG A:CYS12 2.2 0.0 1.0
SG A:CYS37 2.3 0.0 1.0
SG A:CYS9 2.4 0.0 1.0
HB2 A:HIS34 2.9 0.0 1.0
H A:CYS12 2.9 0.0 1.0
CE1 A:HIS34 3.0 0.0 1.0
CG A:HIS34 3.1 0.0 1.0
HE1 A:HIS34 3.2 0.0 1.0
CB A:CYS9 3.3 0.0 1.0
HB2 A:CYS9 3.3 0.0 1.0
HB A:ILE11 3.3 0.0 1.0
HB3 A:CYS9 3.4 0.0 1.0
H A:HIS34 3.4 0.0 1.0
HB2 A:CYS37 3.4 0.0 1.0
HB3 A:CYS12 3.5 0.0 1.0
CB A:CYS12 3.5 0.0 1.0
CB A:CYS37 3.5 0.0 1.0
CB A:HIS34 3.5 0.0 1.0
N A:CYS12 3.7 0.0 1.0
HB3 A:CYS37 3.7 0.0 1.0
H A:ILE11 4.0 0.0 1.0
HD12 A:ILE11 4.1 0.0 1.0
NE2 A:HIS34 4.1 0.0 1.0
HB2 A:GLU14 4.1 0.0 1.0
CA A:CYS12 4.2 0.0 1.0
H A:GLN13 4.2 0.0 1.0
H A:GLU14 4.2 0.0 1.0
CD2 A:HIS34 4.2 0.0 1.0
HB3 A:HIS34 4.3 0.0 1.0
N A:HIS34 4.3 0.0 1.0
HB2 A:CYS12 4.3 0.0 1.0
CB A:ILE11 4.4 0.0 1.0
CA A:HIS34 4.5 0.0 1.0
HG23 A:ILE11 4.6 0.0 1.0
C A:ILE11 4.7 0.0 1.0
N A:GLN13 4.7 0.0 1.0
CA A:CYS9 4.7 0.0 1.0
N A:ILE11 4.8 0.0 1.0
C A:CYS12 4.8 0.0 1.0
HA A:TYR33 4.8 0.0 1.0
H A:THR10 4.8 0.0 1.0
CA A:CYS37 4.8 0.0 1.0
CA A:ILE11 4.9 0.0 1.0
CD1 A:ILE11 4.9 0.0 1.0
HD13 A:ILE11 4.9 0.0 1.0
H A:CYS37 4.9 0.0 1.0
HE2 A:HIS34 5.0 0.0 1.0

Zinc binding site 2 out of 2 in 2yt5

Go back to Zinc Binding Sites List in 2yt5
Zinc binding site 2 out of 2 in the Solution Structure of the Phd Domain of Metal-Response Element-Binding Transcription Factor 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Phd Domain of Metal-Response Element-Binding Transcription Factor 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
SG A:CYS55 2.2 0.0 1.0
SG A:CYS29 2.2 0.0 1.0
SG A:CYS26 2.3 0.0 1.0
SG A:CYS58 2.3 0.0 1.0
H A:CYS29 2.7 0.0 1.0
HB3 A:LYS28 2.9 0.0 1.0
H A:CYS55 3.0 0.0 1.0
HB2 A:CYS58 3.3 0.0 1.0
HB3 A:CYS55 3.4 0.0 1.0
CB A:CYS55 3.4 0.0 1.0
HB2 A:CYS29 3.4 0.0 1.0
CB A:CYS58 3.5 0.0 1.0
CB A:CYS29 3.5 0.0 1.0
CB A:CYS26 3.5 0.0 1.0
HB2 A:CYS26 3.6 0.0 1.0
N A:CYS29 3.6 0.0 1.0
HB3 A:CYS26 3.7 0.0 1.0
H A:CYS58 3.7 0.0 1.0
N A:CYS55 3.8 0.0 1.0
HD22 A:LEU54 4.0 0.0 1.0
CB A:LYS28 4.0 0.0 1.0
HD21 A:LEU54 4.1 0.0 1.0
CA A:CYS55 4.2 0.0 1.0
HB3 A:CYS58 4.2 0.0 1.0
CA A:CYS29 4.2 0.0 1.0
HB2 A:GLN57 4.2 0.0 1.0
HG2 A:LYS28 4.3 0.0 1.0
H A:LYS28 4.3 0.0 1.0
HB2 A:CYS55 4.3 0.0 1.0
HB3 A:CYS29 4.3 0.0 1.0
N A:CYS58 4.3 0.0 1.0
HA A:LEU54 4.5 0.0 1.0
HB3 A:LEU54 4.5 0.0 1.0
HB2 A:LYS28 4.5 0.0 1.0
CA A:CYS58 4.5 0.0 1.0
H A:GLY30 4.5 0.0 1.0
CD2 A:LEU54 4.6 0.0 1.0
HD3 A:LYS28 4.6 0.0 1.0
C A:LYS28 4.7 0.0 1.0
CG A:LYS28 4.7 0.0 1.0
C A:CYS55 4.7 0.0 1.0
O A:CYS55 4.7 0.0 1.0
CA A:LYS28 4.7 0.0 1.0
HA A:CYS29 4.8 0.0 1.0
C A:LEU54 4.8 0.0 1.0
N A:LYS28 4.8 0.0 1.0
CA A:CYS26 4.9 0.0 1.0
HA A:CYS58 4.9 0.0 1.0

Reference:

K.Masuda, Y.Muto, K.Isono, S.Watanabe, T.Harada, T.Kigawa, H.Koseki, S.Yokoyama. Solution Structure of the Phd Domain of Metal-Response Element-Binding Transcription Factor 2 To Be Published.
Page generated: Wed Dec 16 04:03:04 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy