Zinc in PDB 2yt5: Solution Structure of the Phd Domain of Metal-Response Element-Binding Transcription Factor 2

The binding sites of Zinc atom in the Solution Structure of the Phd Domain of Metal-Response Element-Binding Transcription Factor 2 (pdb code 2yt5). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Phd Domain of Metal-Response Element-Binding Transcription Factor 2, PDB code: 2yt5:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of the Phd Domain of Metal-Response Element-Binding Transcription Factor 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Phd Domain of Metal-Response Element-Binding Transcription Factor 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:0.0 occ:1.00 ND1 A:HIS34 2.1 0.0 1.0 SG A:CYS12 2.2 0.0 1.0 SG A:CYS37 2.3 0.0 1.0 SG A:CYS9 2.4 0.0 1.0 HB2 A:HIS34 2.9 0.0 1.0 H A:CYS12 2.9 0.0 1.0 CE1 A:HIS34 3.0 0.0 1.0 CG A:HIS34 3.1 0.0 1.0 HE1 A:HIS34 3.2 0.0 1.0 CB A:CYS9 3.3 0.0 1.0 HB2 A:CYS9 3.3 0.0 1.0 HB A:ILE11 3.3 0.0 1.0 HB3 A:CYS9 3.4 0.0 1.0 H A:HIS34 3.4 0.0 1.0 HB2 A:CYS37 3.4 0.0 1.0 HB3 A:CYS12 3.5 0.0 1.0 CB A:CYS12 3.5 0.0 1.0 CB A:CYS37 3.5 0.0 1.0 CB A:HIS34 3.5 0.0 1.0 N A:CYS12 3.7 0.0 1.0 HB3 A:CYS37 3.7 0.0 1.0 H A:ILE11 4.0 0.0 1.0 HD12 A:ILE11 4.1 0.0 1.0 NE2 A:HIS34 4.1 0.0 1.0 HB2 A:GLU14 4.1 0.0 1.0 CA A:CYS12 4.2 0.0 1.0 H A:GLN13 4.2 0.0 1.0 H A:GLU14 4.2 0.0 1.0 CD2 A:HIS34 4.2 0.0 1.0 HB3 A:HIS34 4.3 0.0 1.0 N A:HIS34 4.3 0.0 1.0 HB2 A:CYS12 4.3 0.0 1.0 CB A:ILE11 4.4 0.0 1.0 CA A:HIS34 4.5 0.0 1.0 HG23 A:ILE11 4.6 0.0 1.0 C A:ILE11 4.7 0.0 1.0 N A:GLN13 4.7 0.0 1.0 CA A:CYS9 4.7 0.0 1.0 N A:ILE11 4.8 0.0 1.0 C A:CYS12 4.8 0.0 1.0 HA A:TYR33 4.8 0.0 1.0 H A:THR10 4.8 0.0 1.0 CA A:CYS37 4.8 0.0 1.0 CA A:ILE11 4.9 0.0 1.0 CD1 A:ILE11 4.9 0.0 1.0 HD13 A:ILE11 4.9 0.0 1.0 H A:CYS37 4.9 0.0 1.0 HE2 A:HIS34 5.0 0.0 1.0

Zinc binding site 2 out of 2 in the Solution Structure of the Phd Domain of Metal-Response Element-Binding Transcription Factor 2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Phd Domain of Metal-Response Element-Binding Transcription Factor 2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:0.0 occ:1.00 SG A:CYS55 2.2 0.0 1.0 SG A:CYS29 2.2 0.0 1.0 SG A:CYS26 2.3 0.0 1.0 SG A:CYS58 2.3 0.0 1.0 H A:CYS29 2.7 0.0 1.0 HB3 A:LYS28 2.9 0.0 1.0 H A:CYS55 3.0 0.0 1.0 HB2 A:CYS58 3.3 0.0 1.0 HB3 A:CYS55 3.4 0.0 1.0 CB A:CYS55 3.4 0.0 1.0 HB2 A:CYS29 3.4 0.0 1.0 CB A:CYS58 3.5 0.0 1.0 CB A:CYS29 3.5 0.0 1.0 CB A:CYS26 3.5 0.0 1.0 HB2 A:CYS26 3.6 0.0 1.0 N A:CYS29 3.6 0.0 1.0 HB3 A:CYS26 3.7 0.0 1.0 H A:CYS58 3.7 0.0 1.0 N A:CYS55 3.8 0.0 1.0 HD22 A:LEU54 4.0 0.0 1.0 CB A:LYS28 4.0 0.0 1.0 HD21 A:LEU54 4.1 0.0 1.0 CA A:CYS55 4.2 0.0 1.0 HB3 A:CYS58 4.2 0.0 1.0 CA A:CYS29 4.2 0.0 1.0 HB2 A:GLN57 4.2 0.0 1.0 HG2 A:LYS28 4.3 0.0 1.0 H A:LYS28 4.3 0.0 1.0 HB2 A:CYS55 4.3 0.0 1.0 HB3 A:CYS29 4.3 0.0 1.0 N A:CYS58 4.3 0.0 1.0 HA A:LEU54 4.5 0.0 1.0 HB3 A:LEU54 4.5 0.0 1.0 HB2 A:LYS28 4.5 0.0 1.0 CA A:CYS58 4.5 0.0 1.0 H A:GLY30 4.5 0.0 1.0 CD2 A:LEU54 4.6 0.0 1.0 HD3 A:LYS28 4.6 0.0 1.0 C A:LYS28 4.7 0.0 1.0 CG A:LYS28 4.7 0.0 1.0 C A:CYS55 4.7 0.0 1.0 O A:CYS55 4.7 0.0 1.0 CA A:LYS28 4.7 0.0 1.0 HA A:CYS29 4.8 0.0 1.0 C A:LEU54 4.8 0.0 1.0 N A:LYS28 4.8 0.0 1.0 CA A:CYS26 4.9 0.0 1.0 HA A:CYS58 4.9 0.0 1.0

K.Masuda, Y.Muto, K.Isono, S.Watanabe, T.Harada, T.Kigawa, H.Koseki, S.Yokoyama. Solution Structure of the Phd Domain of Metal-Response Element-Binding Transcription Factor 2 To Be Published.