Zinc in PDB 2yre: Solution Structure of the Zinc Finger Domains (1-87) From Human F-Box Only Protein

The binding sites of Zinc atom in the Solution Structure of the Zinc Finger Domains (1-87) From Human F-Box Only Protein (pdb code 2yre). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Solution Structure of the Zinc Finger Domains (1-87) From Human F-Box Only Protein, PDB code: 2yre:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Solution Structure of the Zinc Finger Domains (1-87) From Human F-Box Only Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Zinc Finger Domains (1-87) From Human F-Box Only Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:0.0 occ:1.00 ND1 A:HIS7 2.1 0.0 1.0 SG A:CYS28 2.2 0.0 1.0 SG A:CYS10 2.2 0.0 1.0 SG A:CYS44 2.3 0.0 1.0 HB3 A:CYS44 2.7 0.0 1.0 HB3 A:HIS42 2.8 0.0 1.0 HB2 A:HIS7 2.9 0.0 1.0 H A:CYS28 3.0 0.0 1.0 CE1 A:HIS7 3.0 0.0 1.0 CG A:HIS7 3.1 0.0 1.0 CB A:CYS44 3.1 0.0 1.0 HB3 A:CYS28 3.2 0.0 1.0 HE1 A:HIS7 3.2 0.0 1.0 CB A:CYS28 3.3 0.0 1.0 CB A:CYS10 3.3 0.0 1.0 HB2 A:CYS10 3.4 0.0 1.0 CB A:HIS7 3.4 0.0 1.0 HB3 A:CYS10 3.5 0.0 1.0 H A:CYS44 3.5 0.0 1.0 N A:CYS28 3.7 0.0 1.0 HB3 A:HIS7 3.8 0.0 1.0 CB A:HIS42 3.8 0.0 1.0 HB2 A:CYS44 3.8 0.0 1.0 HD1 A:HIS42 3.8 0.0 1.0 HB2 A:HIS42 3.9 0.0 1.0 HG2 A:LYS45 4.1 0.0 1.0 HA A:SER27 4.1 0.0 1.0 CA A:CYS28 4.1 0.0 1.0 NE2 A:HIS7 4.1 0.0 1.0 ND1 A:HIS42 4.1 0.0 1.0 CG A:HIS42 4.1 0.0 1.0 CD2 A:HIS7 4.2 0.0 1.0 HB2 A:CYS28 4.2 0.0 1.0 N A:CYS44 4.2 0.0 1.0 CA A:CYS44 4.2 0.0 1.0 H A:LYS45 4.3 0.0 1.0 H A:CYS10 4.6 0.0 1.0 C A:SER27 4.7 0.0 1.0 H A:HIS7 4.7 0.0 1.0 HG A:SER43 4.7 0.0 1.0 CA A:CYS10 4.8 0.0 1.0 C A:CYS28 4.8 0.0 1.0 CA A:HIS7 4.8 0.0 1.0 O A:CYS28 4.8 0.0 1.0 N A:LYS45 4.9 0.0 1.0 CA A:SER27 4.9 0.0 1.0 HA A:CYS28 5.0 0.0 1.0 HE2 A:HIS7 5.0 0.0 1.0 CA A:HIS42 5.0 0.0 1.0

Zinc binding site 2 out of 4 in the Solution Structure of the Zinc Finger Domains (1-87) From Human F-Box Only Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Zinc Finger Domains (1-87) From Human F-Box Only Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn501 b:0.0 occ:1.00 NE2 A:HIS9 2.1 0.0 1.0 NE2 A:HIS42 2.1 0.0 1.0 SG A:CYS13 2.3 0.0 1.0 SG A:CYS18 2.3 0.0 1.0 CE1 A:HIS42 2.9 0.0 1.0 CD2 A:HIS9 3.0 0.0 1.0 CE1 A:HIS9 3.1 0.0 1.0 HE1 A:HIS42 3.1 0.0 1.0 CD2 A:HIS42 3.1 0.0 1.0 HD2 A:HIS9 3.2 0.0 1.0 HB2 A:CYS13 3.2 0.0 1.0 CB A:CYS13 3.2 0.0 1.0 CB A:CYS18 3.2 0.0 1.0 HB2 A:CYS18 3.2 0.0 1.0 HB3 A:CYS18 3.3 0.0 1.0 HB3 A:CYS13 3.3 0.0 1.0 HE1 A:HIS9 3.4 0.0 1.0 HD2 A:HIS42 3.5 0.0 1.0 HD11 A:LEU30 3.8 0.0 1.0 HB A:THR20 3.9 0.0 1.0 HA A:CYS10 3.9 0.0 1.0 ND1 A:HIS42 4.1 0.0 1.0 CG A:HIS9 4.1 0.0 1.0 ND1 A:HIS9 4.1 0.0 1.0 HD23 A:LEU30 4.1 0.0 1.0 CG A:HIS42 4.2 0.0 1.0 HG A:LEU30 4.3 0.0 1.0 HB2 A:SER27 4.4 0.0 1.0 H A:THR20 4.5 0.0 1.0 CD1 A:LEU30 4.6 0.0 1.0 CA A:CYS13 4.7 0.0 1.0 CA A:CYS18 4.7 0.0 1.0 HD12 A:LEU30 4.8 0.0 1.0 CB A:THR20 4.9 0.0 1.0 CA A:CYS10 4.9 0.0 1.0 CG A:LEU30 4.9 0.0 1.0 HD1 A:HIS42 5.0 0.0 1.0 HA A:CYS13 5.0 0.0 1.0 CD2 A:LEU30 5.0 0.0 1.0

Zinc binding site 3 out of 4 in the Solution Structure of the Zinc Finger Domains (1-87) From Human F-Box Only Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Solution Structure of the Zinc Finger Domains (1-87) From Human F-Box Only Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn601 b:0.0 occ:1.00 NE2 A:HIS49 2.0 0.0 1.0 SG A:CYS33 2.3 0.0 1.0 SG A:CYS37 2.3 0.0 1.0 SG A:CYS53 2.4 0.0 1.0 HB2 A:CYS53 2.7 0.0 1.0 HB3 A:CYS37 2.8 0.0 1.0 HB2 A:CYS33 3.0 0.0 1.0 CE1 A:HIS49 3.0 0.0 1.0 CD2 A:HIS49 3.0 0.0 1.0 CB A:CYS37 3.1 0.0 1.0 CB A:CYS53 3.1 0.0 1.0 HE1 A:PHE41 3.2 0.0 1.0 CB A:CYS33 3.2 0.0 1.0 HD2 A:HIS49 3.3 0.0 1.0 HE1 A:HIS49 3.3 0.0 1.0 HZ A:PHE41 3.3 0.0 1.0 HB2 A:CYS37 3.5 0.0 1.0 HB3 A:CYS33 3.6 0.0 1.0 HB2 A:ALA39 3.7 0.0 1.0 HB3 A:CYS53 3.8 0.0 1.0 CE1 A:PHE41 3.8 0.0 1.0 CZ A:PHE41 3.9 0.0 1.0 HA A:CYS53 4.1 0.0 1.0 H A:CYS37 4.1 0.0 1.0 ND1 A:HIS49 4.1 0.0 1.0 CG A:HIS49 4.2 0.0 1.0 CA A:CYS53 4.2 0.0 1.0 HD2 A:PRO54 4.3 0.0 1.0 HB2 A:LEU35 4.4 0.0 1.0 CA A:CYS37 4.4 0.0 1.0 HB2 A:PHE55 4.5 0.0 1.0 CA A:CYS33 4.5 0.0 1.0 HD2 A:PRO34 4.5 0.0 1.0 HA A:CYS33 4.6 0.0 1.0 N A:CYS37 4.7 0.0 1.0 HA A:ARG50 4.7 0.0 1.0 CB A:ALA39 4.7 0.0 1.0 H A:LEU35 4.9 0.0 1.0 H A:GLY38 5.0 0.0 1.0

Zinc binding site 4 out of 4 in the Solution Structure of the Zinc Finger Domains (1-87) From Human F-Box Only Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Solution Structure of the Zinc Finger Domains (1-87) From Human F-Box Only Protein within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn701 b:0.0 occ:1.00 NE2 A:HIS79 2.0 0.0 1.0 SG A:CYS67 2.2 0.0 1.0 SG A:CYS60 2.3 0.0 1.0 SG A:CYS83 2.3 0.0 1.0 HB2 A:CYS60 2.9 0.0 1.0 CD2 A:HIS79 3.0 0.0 1.0 CE1 A:HIS79 3.1 0.0 1.0 CB A:CYS60 3.1 0.0 1.0 HB2 A:CYS83 3.2 0.0 1.0 HD2 A:HIS79 3.2 0.0 1.0 HE1 A:HIS79 3.3 0.0 1.0 CB A:CYS83 3.4 0.0 1.0 CB A:CYS67 3.4 0.0 1.0 HB2 A:PHE69 3.4 0.0 1.0 HB3 A:CYS60 3.4 0.0 1.0 HB3 A:CYS67 3.5 0.0 1.0 HB2 A:CYS67 3.5 0.0 1.0 HD2 A:PRO84 3.5 0.0 1.0 HB2 A:ALA85 3.7 0.0 1.0 HD21 A:ASN62 3.9 0.0 1.0 HB3 A:CYS83 4.1 0.0 1.0 CG A:HIS79 4.1 0.0 1.0 ND1 A:HIS79 4.1 0.0 1.0 H A:ALA85 4.2 0.0 1.0 HD1 A:PHE69 4.2 0.0 1.0 HA A:CYS83 4.3 0.0 1.0 HD21 A:LEU80 4.4 0.0 1.0 CB A:PHE69 4.4 0.0 1.0 HE3 A:MET71 4.4 0.0 1.0 CA A:CYS83 4.5 0.0 1.0 HA A:LEU80 4.5 0.0 1.0 CA A:CYS60 4.5 0.0 1.0 HB2 A:ASN62 4.5 0.0 1.0 CD A:PRO84 4.6 0.0 1.0 HA A:CYS60 4.6 0.0 1.0 CD1 A:PHE69 4.7 0.0 1.0 HB3 A:PHE69 4.7 0.0 1.0 HD23 A:LEU80 4.7 0.0 1.0 HG2 A:PRO84 4.8 0.0 1.0 CG A:PHE69 4.8 0.0 1.0 CB A:ALA85 4.8 0.0 1.0 CA A:CYS67 4.8 0.0 1.0 H A:ASN62 4.8 0.0 1.0 H A:PHE69 4.8 0.0 1.0 ND2 A:ASN62 4.9 0.0 1.0 HA A:CYS67 5.0 0.0 1.0

T.Nagashima, T.Suetake, F.Hayashi, S.Yokoyama. Solution Structure of the Zinc Finger Domains (1-87) From Human F-Box Only Protein To Be Published.