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Zinc in PDB 2yre: Solution Structure of the Zinc Finger Domains (1-87) From Human F-Box Only Protein

Zinc Binding Sites:

The binding sites of Zinc atom in the Solution Structure of the Zinc Finger Domains (1-87) From Human F-Box Only Protein (pdb code 2yre). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Solution Structure of the Zinc Finger Domains (1-87) From Human F-Box Only Protein, PDB code: 2yre:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 2yre

Go back to Zinc Binding Sites List in 2yre
Zinc binding site 1 out of 4 in the Solution Structure of the Zinc Finger Domains (1-87) From Human F-Box Only Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Zinc Finger Domains (1-87) From Human F-Box Only Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn401

b:0.0
occ:1.00
ND1 A:HIS7 2.1 0.0 1.0
SG A:CYS28 2.2 0.0 1.0
SG A:CYS10 2.2 0.0 1.0
SG A:CYS44 2.3 0.0 1.0
HB3 A:CYS44 2.7 0.0 1.0
HB3 A:HIS42 2.8 0.0 1.0
HB2 A:HIS7 2.9 0.0 1.0
H A:CYS28 3.0 0.0 1.0
CE1 A:HIS7 3.0 0.0 1.0
CG A:HIS7 3.1 0.0 1.0
CB A:CYS44 3.1 0.0 1.0
HB3 A:CYS28 3.2 0.0 1.0
HE1 A:HIS7 3.2 0.0 1.0
CB A:CYS28 3.3 0.0 1.0
CB A:CYS10 3.3 0.0 1.0
HB2 A:CYS10 3.4 0.0 1.0
CB A:HIS7 3.4 0.0 1.0
HB3 A:CYS10 3.5 0.0 1.0
H A:CYS44 3.5 0.0 1.0
N A:CYS28 3.7 0.0 1.0
HB3 A:HIS7 3.8 0.0 1.0
CB A:HIS42 3.8 0.0 1.0
HB2 A:CYS44 3.8 0.0 1.0
HD1 A:HIS42 3.8 0.0 1.0
HB2 A:HIS42 3.9 0.0 1.0
HG2 A:LYS45 4.1 0.0 1.0
HA A:SER27 4.1 0.0 1.0
CA A:CYS28 4.1 0.0 1.0
NE2 A:HIS7 4.1 0.0 1.0
ND1 A:HIS42 4.1 0.0 1.0
CG A:HIS42 4.1 0.0 1.0
CD2 A:HIS7 4.2 0.0 1.0
HB2 A:CYS28 4.2 0.0 1.0
N A:CYS44 4.2 0.0 1.0
CA A:CYS44 4.2 0.0 1.0
H A:LYS45 4.3 0.0 1.0
H A:CYS10 4.6 0.0 1.0
C A:SER27 4.7 0.0 1.0
H A:HIS7 4.7 0.0 1.0
HG A:SER43 4.7 0.0 1.0
CA A:CYS10 4.8 0.0 1.0
C A:CYS28 4.8 0.0 1.0
CA A:HIS7 4.8 0.0 1.0
O A:CYS28 4.8 0.0 1.0
N A:LYS45 4.9 0.0 1.0
CA A:SER27 4.9 0.0 1.0
HA A:CYS28 5.0 0.0 1.0
HE2 A:HIS7 5.0 0.0 1.0
CA A:HIS42 5.0 0.0 1.0

Zinc binding site 2 out of 4 in 2yre

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Zinc binding site 2 out of 4 in the Solution Structure of the Zinc Finger Domains (1-87) From Human F-Box Only Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Zinc Finger Domains (1-87) From Human F-Box Only Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn501

b:0.0
occ:1.00
NE2 A:HIS9 2.1 0.0 1.0
NE2 A:HIS42 2.1 0.0 1.0
SG A:CYS13 2.3 0.0 1.0
SG A:CYS18 2.3 0.0 1.0
CE1 A:HIS42 2.9 0.0 1.0
CD2 A:HIS9 3.0 0.0 1.0
CE1 A:HIS9 3.1 0.0 1.0
HE1 A:HIS42 3.1 0.0 1.0
CD2 A:HIS42 3.1 0.0 1.0
HD2 A:HIS9 3.2 0.0 1.0
HB2 A:CYS13 3.2 0.0 1.0
CB A:CYS13 3.2 0.0 1.0
CB A:CYS18 3.2 0.0 1.0
HB2 A:CYS18 3.2 0.0 1.0
HB3 A:CYS18 3.3 0.0 1.0
HB3 A:CYS13 3.3 0.0 1.0
HE1 A:HIS9 3.4 0.0 1.0
HD2 A:HIS42 3.5 0.0 1.0
HD11 A:LEU30 3.8 0.0 1.0
HB A:THR20 3.9 0.0 1.0
HA A:CYS10 3.9 0.0 1.0
ND1 A:HIS42 4.1 0.0 1.0
CG A:HIS9 4.1 0.0 1.0
ND1 A:HIS9 4.1 0.0 1.0
HD23 A:LEU30 4.1 0.0 1.0
CG A:HIS42 4.2 0.0 1.0
HG A:LEU30 4.3 0.0 1.0
HB2 A:SER27 4.4 0.0 1.0
H A:THR20 4.5 0.0 1.0
CD1 A:LEU30 4.6 0.0 1.0
CA A:CYS13 4.7 0.0 1.0
CA A:CYS18 4.7 0.0 1.0
HD12 A:LEU30 4.8 0.0 1.0
CB A:THR20 4.9 0.0 1.0
CA A:CYS10 4.9 0.0 1.0
CG A:LEU30 4.9 0.0 1.0
HD1 A:HIS42 5.0 0.0 1.0
HA A:CYS13 5.0 0.0 1.0
CD2 A:LEU30 5.0 0.0 1.0

Zinc binding site 3 out of 4 in 2yre

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Zinc binding site 3 out of 4 in the Solution Structure of the Zinc Finger Domains (1-87) From Human F-Box Only Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Solution Structure of the Zinc Finger Domains (1-87) From Human F-Box Only Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn601

b:0.0
occ:1.00
NE2 A:HIS49 2.0 0.0 1.0
SG A:CYS33 2.3 0.0 1.0
SG A:CYS37 2.3 0.0 1.0
SG A:CYS53 2.4 0.0 1.0
HB2 A:CYS53 2.7 0.0 1.0
HB3 A:CYS37 2.8 0.0 1.0
HB2 A:CYS33 3.0 0.0 1.0
CE1 A:HIS49 3.0 0.0 1.0
CD2 A:HIS49 3.0 0.0 1.0
CB A:CYS37 3.1 0.0 1.0
CB A:CYS53 3.1 0.0 1.0
HE1 A:PHE41 3.2 0.0 1.0
CB A:CYS33 3.2 0.0 1.0
HD2 A:HIS49 3.3 0.0 1.0
HE1 A:HIS49 3.3 0.0 1.0
HZ A:PHE41 3.3 0.0 1.0
HB2 A:CYS37 3.5 0.0 1.0
HB3 A:CYS33 3.6 0.0 1.0
HB2 A:ALA39 3.7 0.0 1.0
HB3 A:CYS53 3.8 0.0 1.0
CE1 A:PHE41 3.8 0.0 1.0
CZ A:PHE41 3.9 0.0 1.0
HA A:CYS53 4.1 0.0 1.0
H A:CYS37 4.1 0.0 1.0
ND1 A:HIS49 4.1 0.0 1.0
CG A:HIS49 4.2 0.0 1.0
CA A:CYS53 4.2 0.0 1.0
HD2 A:PRO54 4.3 0.0 1.0
HB2 A:LEU35 4.4 0.0 1.0
CA A:CYS37 4.4 0.0 1.0
HB2 A:PHE55 4.5 0.0 1.0
CA A:CYS33 4.5 0.0 1.0
HD2 A:PRO34 4.5 0.0 1.0
HA A:CYS33 4.6 0.0 1.0
N A:CYS37 4.7 0.0 1.0
HA A:ARG50 4.7 0.0 1.0
CB A:ALA39 4.7 0.0 1.0
H A:LEU35 4.9 0.0 1.0
H A:GLY38 5.0 0.0 1.0

Zinc binding site 4 out of 4 in 2yre

Go back to Zinc Binding Sites List in 2yre
Zinc binding site 4 out of 4 in the Solution Structure of the Zinc Finger Domains (1-87) From Human F-Box Only Protein


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Solution Structure of the Zinc Finger Domains (1-87) From Human F-Box Only Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn701

b:0.0
occ:1.00
NE2 A:HIS79 2.0 0.0 1.0
SG A:CYS67 2.2 0.0 1.0
SG A:CYS60 2.3 0.0 1.0
SG A:CYS83 2.3 0.0 1.0
HB2 A:CYS60 2.9 0.0 1.0
CD2 A:HIS79 3.0 0.0 1.0
CE1 A:HIS79 3.1 0.0 1.0
CB A:CYS60 3.1 0.0 1.0
HB2 A:CYS83 3.2 0.0 1.0
HD2 A:HIS79 3.2 0.0 1.0
HE1 A:HIS79 3.3 0.0 1.0
CB A:CYS83 3.4 0.0 1.0
CB A:CYS67 3.4 0.0 1.0
HB2 A:PHE69 3.4 0.0 1.0
HB3 A:CYS60 3.4 0.0 1.0
HB3 A:CYS67 3.5 0.0 1.0
HB2 A:CYS67 3.5 0.0 1.0
HD2 A:PRO84 3.5 0.0 1.0
HB2 A:ALA85 3.7 0.0 1.0
HD21 A:ASN62 3.9 0.0 1.0
HB3 A:CYS83 4.1 0.0 1.0
CG A:HIS79 4.1 0.0 1.0
ND1 A:HIS79 4.1 0.0 1.0
H A:ALA85 4.2 0.0 1.0
HD1 A:PHE69 4.2 0.0 1.0
HA A:CYS83 4.3 0.0 1.0
HD21 A:LEU80 4.4 0.0 1.0
CB A:PHE69 4.4 0.0 1.0
HE3 A:MET71 4.4 0.0 1.0
CA A:CYS83 4.5 0.0 1.0
HA A:LEU80 4.5 0.0 1.0
CA A:CYS60 4.5 0.0 1.0
HB2 A:ASN62 4.5 0.0 1.0
CD A:PRO84 4.6 0.0 1.0
HA A:CYS60 4.6 0.0 1.0
CD1 A:PHE69 4.7 0.0 1.0
HB3 A:PHE69 4.7 0.0 1.0
HD23 A:LEU80 4.7 0.0 1.0
HG2 A:PRO84 4.8 0.0 1.0
CG A:PHE69 4.8 0.0 1.0
CB A:ALA85 4.8 0.0 1.0
CA A:CYS67 4.8 0.0 1.0
H A:ASN62 4.8 0.0 1.0
H A:PHE69 4.8 0.0 1.0
ND2 A:ASN62 4.9 0.0 1.0
HA A:CYS67 5.0 0.0 1.0

Reference:

T.Nagashima, T.Suetake, F.Hayashi, S.Yokoyama. Solution Structure of the Zinc Finger Domains (1-87) From Human F-Box Only Protein To Be Published.
Page generated: Wed Dec 16 04:02:42 2020

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