Zinc in PDB 2yqq: Solution Structure of the Zf-Hit Domain in Zinc Finger Hit Domain-Containing Protein 3 (Trip-3)

The binding sites of Zinc atom in the Solution Structure of the Zf-Hit Domain in Zinc Finger Hit Domain-Containing Protein 3 (Trip-3) (pdb code 2yqq). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Solution Structure of the Zf-Hit Domain in Zinc Finger Hit Domain-Containing Protein 3 (Trip-3), PDB code: 2yqq:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in the Solution Structure of the Zf-Hit Domain in Zinc Finger Hit Domain-Containing Protein 3 (Trip-3)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Solution Structure of the Zf-Hit Domain in Zinc Finger Hit Domain-Containing Protein 3 (Trip-3) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn201 b:0.0 occ:1.00 SG A:CYS34 2.1 0.0 1.0 SG A:CYS15 2.3 0.0 1.0 SG A:CYS18 2.4 0.0 1.0 SG A:CYS38 2.4 0.0 1.0 H A:CYS34 2.8 0.0 1.0 H A:CYS18 3.0 0.0 1.0 HB2 A:CYS38 3.2 0.0 1.0 HB A:ILE17 3.2 0.0 1.0 CB A:CYS38 3.2 0.0 1.0 HB3 A:CYS15 3.2 0.0 1.0 CB A:CYS15 3.2 0.0 1.0 HB3 A:CYS38 3.3 0.0 1.0 HB2 A:CYS15 3.3 0.0 1.0 HB3 A:CYS18 3.4 0.0 1.0 CB A:CYS18 3.5 0.0 1.0 CB A:CYS34 3.6 0.0 1.0 HB3 A:CYS34 3.7 0.0 1.0 N A:CYS34 3.7 0.0 1.0 N A:CYS18 3.8 0.0 1.0 HA A:TYR33 3.9 0.0 1.0 H A:SER35 4.1 0.0 1.0 HB2 A:GLU20 4.1 0.0 1.0 H A:LEU19 4.2 0.0 1.0 CA A:CYS18 4.2 0.0 1.0 CB A:ILE17 4.3 0.0 1.0 CA A:CYS34 4.3 0.0 1.0 H A:GLU20 4.3 0.0 1.0 HB2 A:CYS18 4.4 0.0 1.0 H A:ILE17 4.4 0.0 1.0 HB2 A:CYS34 4.4 0.0 1.0 HG22 A:ILE17 4.5 0.0 1.0 CA A:CYS15 4.7 0.0 1.0 CA A:CYS38 4.7 0.0 1.0 C A:TYR33 4.8 0.0 1.0 C A:ILE17 4.8 0.0 1.0 N A:LEU19 4.8 0.0 1.0 CA A:TYR33 4.8 0.0 1.0 H A:CYS38 4.9 0.0 1.0 C A:CYS18 4.9 0.0 1.0 HG3 A:GLU20 4.9 0.0 1.0 CG2 A:ILE17 4.9 0.0 1.0 HG13 A:ILE17 4.9 0.0 1.0 N A:SER35 4.9 0.0 1.0 CA A:ILE17 4.9 0.0 1.0

Zinc binding site 2 out of 2 in the Solution Structure of the Zf-Hit Domain in Zinc Finger Hit Domain-Containing Protein 3 (Trip-3)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Solution Structure of the Zf-Hit Domain in Zinc Finger Hit Domain-Containing Protein 3 (Trip-3) within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn401 b:0.0 occ:1.00 NE2 A:HIS42 2.1 0.0 1.0 SG A:CYS29 2.2 0.0 1.0 SG A:CYS46 2.3 0.0 1.0 SG A:CYS26 2.4 0.0 1.0 HE1 A:HIS42 2.6 0.0 1.0 CE1 A:HIS42 2.7 0.0 1.0 H A:CYS29 2.7 0.0 1.0 HB1 A:ALA28 2.8 0.0 1.0 HB2 A:CYS46 3.1 0.0 1.0 HB3 A:CYS26 3.2 0.0 1.0 HG22 A:VAL31 3.3 0.0 1.0 CB A:CYS26 3.3 0.0 1.0 CB A:CYS46 3.3 0.0 1.0 CD2 A:HIS42 3.4 0.0 1.0 HB2 A:CYS26 3.5 0.0 1.0 CB A:CYS29 3.5 0.0 1.0 N A:CYS29 3.6 0.0 1.0 HB3 A:CYS29 3.6 0.0 1.0 HE1 A:PHE39 3.8 0.0 1.0 HD2 A:HIS42 3.9 0.0 1.0 CB A:ALA28 3.9 0.0 1.0 ND1 A:HIS42 3.9 0.0 1.0 HA A:CYS46 4.0 0.0 1.0 CA A:CYS29 4.1 0.0 1.0 HE3 A:LYS43 4.1 0.0 1.0 HB3 A:CYS46 4.2 0.0 1.0 H A:ALA28 4.2 0.0 1.0 CG2 A:VAL31 4.2 0.0 1.0 CA A:CYS46 4.2 0.0 1.0 HG23 A:VAL31 4.2 0.0 1.0 HB2 A:ALA28 4.2 0.0 1.0 HG12 A:VAL31 4.2 0.0 1.0 CG A:HIS42 4.3 0.0 1.0 H A:ARG30 4.3 0.0 1.0 HB2 A:CYS29 4.4 0.0 1.0 HB3 A:ALA28 4.5 0.0 1.0 H A:VAL31 4.5 0.0 1.0 C A:ALA28 4.6 0.0 1.0 HA A:LYS43 4.6 0.0 1.0 CA A:ALA28 4.6 0.0 1.0 C A:CYS46 4.7 0.0 1.0 HD1 A:HIS42 4.7 0.0 1.0 CA A:CYS26 4.7 0.0 1.0 HG11 A:VAL31 4.8 0.0 1.0 HG21 A:VAL31 4.8 0.0 1.0 CE1 A:PHE39 4.8 0.0 1.0 N A:ALA28 4.8 0.0 1.0 N A:ARG30 4.9 0.0 1.0 CG1 A:VAL31 4.9 0.0 1.0 H A:ASN47 4.9 0.0 1.0 C A:CYS29 4.9 0.0 1.0 HZ3 A:LYS43 4.9 0.0 1.0 N A:ASN47 5.0 0.0 1.0

S.Suzuki, F.He, S.Suzuki, Y.Muto, M.Inoue, T.Kigawa, T.Terada, M.Shirouzu, S.Yokoyama. Solution Structure of the Zf-Hit Domain in Zinc Finger Hit Domain-Containing Protein 3 (Trip-3) To Be Published.