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Zinc in PDB 2y0o: The Structure of A D-Lyxose Isomerase From the Sigmab Regulon of Bacillus Subtilis

Enzymatic activity of The Structure of A D-Lyxose Isomerase From the Sigmab Regulon of Bacillus Subtilis

All present enzymatic activity of The Structure of A D-Lyxose Isomerase From the Sigmab Regulon of Bacillus Subtilis:
5.3.1.15;

Protein crystallography data

The structure of The Structure of A D-Lyxose Isomerase From the Sigmab Regulon of Bacillus Subtilis, PDB code: 2y0o was solved by J.Marles-Wright, R.J.Lewis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.872 / 1.23
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 74.716, 42.619, 65.881, 90.00, 121.30, 90.00
R / Rfree (%) 14.53 / 17.82

Other elements in 2y0o:

The structure of The Structure of A D-Lyxose Isomerase From the Sigmab Regulon of Bacillus Subtilis also contains other interesting chemical elements:

Arsenic (As) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the The Structure of A D-Lyxose Isomerase From the Sigmab Regulon of Bacillus Subtilis (pdb code 2y0o). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the The Structure of A D-Lyxose Isomerase From the Sigmab Regulon of Bacillus Subtilis, PDB code: 2y0o:

Zinc binding site 1 out of 1 in 2y0o

Go back to Zinc Binding Sites List in 2y0o
Zinc binding site 1 out of 1 in the The Structure of A D-Lyxose Isomerase From the Sigmab Regulon of Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of The Structure of A D-Lyxose Isomerase From the Sigmab Regulon of Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1173

b:12.3
occ:0.59
 O A:HOH2262 1.9 24.7 1.0
O A:HOH2263 2.0 33.1 1.0
OE2 A:GLU82 2.1 20.5 1.0
NE2 A:HIS137 2.2 14.3 1.0
NE2 A:HIS71 2.2 13.4 1.0
NE2 A:HIS69 2.4 16.4 1.0
CE1 A:HIS137 3.0 14.6 1.0
CE1 A:HIS71 3.0 12.8 1.0
CD A:GLU82 3.1 22.7 1.0
CD2 A:HIS71 3.3 13.2 1.0
CD2 A:HIS137 3.3 13.5 1.0
CD2 A:HIS69 3.3 13.8 1.0
CE1 A:HIS69 3.4 16.2 1.0
OE1 A:GLU82 3.4 26.8 1.0
O A:HOH2149 3.4 44.5 1.0
AS A:ARS1176 3.6 33.2 0.6
ND1 A:HIS137 4.2 12.2 1.0
ND1 A:HIS71 4.2 12.9 1.0
CG A:HIS71 4.3 12.9 1.0
CG A:HIS137 4.4 11.0 1.0
CG A:GLU82 4.4 21.9 1.0
ND1 A:HIS69 4.5 14.3 1.0
CG A:HIS69 4.5 12.9 1.0
NZ A:LYS80 4.6 21.4 1.0
CZ A:PHE84 4.8 28.6 1.0
CE A:LYS80 4.9 19.9 1.0

Reference:

J.Marles-Wright, R.J.Lewis. The Structure of A D-Lyxose Isomerase From the Sigmab Regulon of Bacillus Subtilis Proteins V. 79 2015 2011.
ISSN: ISSN 0887-3585
PubMed: 21520290
DOI: 10.1002/PROT.23028
Page generated: Thu Oct 17 05:38:07 2024

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