Atomistry » Zinc » PDB 2xjy-2xxg » 2xpz
Atomistry »
  Zinc »
    PDB 2xjy-2xxg »
      2xpz »

Zinc in PDB 2xpz: Structure of Native Yeast LTA4 Hydrolase

Enzymatic activity of Structure of Native Yeast LTA4 Hydrolase

All present enzymatic activity of Structure of Native Yeast LTA4 Hydrolase:
3.3.2.6;

Protein crystallography data

The structure of Structure of Native Yeast LTA4 Hydrolase, PDB code: 2xpz was solved by C.Helgstrand, M.Hasan, H.Usyal, J.Z.Haeggstrom, M.M.G.M.Thunnissen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 14.98 / 2.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 70.833, 98.096, 99.197, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 26.9

Zinc Binding Sites:

The binding sites of Zinc atom in the Structure of Native Yeast LTA4 Hydrolase (pdb code 2xpz). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Structure of Native Yeast LTA4 Hydrolase, PDB code: 2xpz:

Zinc binding site 1 out of 1 in 2xpz

Go back to Zinc Binding Sites List in 2xpz
Zinc binding site 1 out of 1 in the Structure of Native Yeast LTA4 Hydrolase


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Structure of Native Yeast LTA4 Hydrolase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1673

b:32.0
occ:1.00
OE2 A:GLU363 2.1 52.2 1.0
NE2 A:HIS340 2.1 32.7 1.0
NE2 A:HIS344 2.3 21.4 1.0
OE1 A:GLU363 2.7 56.8 1.0
CD A:GLU363 2.8 50.6 1.0
CD2 A:HIS340 3.0 23.9 1.0
CD2 A:HIS344 3.1 20.3 1.0
O A:HOH2286 3.1 45.6 1.0
CE1 A:HIS340 3.2 31.8 1.0
CE1 A:HIS344 3.4 21.3 1.0
O A:HOH2164 4.0 46.4 1.0
CE2 A:TYR429 4.1 7.7 1.0
CG A:HIS340 4.2 19.7 1.0
CG A:GLU363 4.2 36.6 1.0
ND1 A:HIS340 4.3 26.3 1.0
OE1 A:GLU316 4.3 28.8 1.0
CG A:HIS344 4.3 17.5 1.0
ND1 A:HIS344 4.4 15.7 1.0
CG2 A:THR366 4.5 10.9 1.0
CD A:GLU316 4.7 27.7 1.0
OH A:TYR429 4.7 30.2 1.0
O A:HOH2166 4.8 24.1 1.0
CZ A:TYR429 4.9 22.4 1.0
OE2 A:GLU341 4.9 36.3 1.0
OE2 A:GLU316 4.9 25.1 1.0
CD2 A:TYR429 5.0 21.1 1.0

Reference:

C.Helgstrand, M.Hasan, H.Usyal, J.Z.Haeggstrom, M.M.G.M.Thunnissen. A Leukotriene A(4) Hydrolase-Related Aminopeptidase From Yeast Undergoes Induced Fit Upon Inhibitor Binding. J.Mol.Biol. V. 406 120 2011.
ISSN: ISSN 0022-2836
PubMed: 21146536
DOI: 10.1016/J.JMB.2010.11.059
Page generated: Wed Dec 16 04:00:19 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy