Atomistry » Zinc » PDB 2xjy-2xxg » 2xod
Atomistry »
  Zinc »
    PDB 2xjy-2xxg »
      2xod »

Zinc in PDB 2xod: Crystal Structure of Flavoprotein Nrdi From Bacillus Anthracis in the Oxidised Form

Protein crystallography data

The structure of Crystal Structure of Flavoprotein Nrdi From Bacillus Anthracis in the Oxidised Form, PDB code: 2xod was solved by R.Johansson, J.Sprenger, E.Torrents, M.Sahlin, B.M.Sjoberg, D.T.Logan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 0.96
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 42.540, 45.550, 56.130, 90.00, 90.00, 90.00
R / Rfree (%) 12.4 / 15.1

Other elements in 2xod:

The structure of Crystal Structure of Flavoprotein Nrdi From Bacillus Anthracis in the Oxidised Form also contains other interesting chemical elements:

Arsenic (As) 1 atom

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Flavoprotein Nrdi From Bacillus Anthracis in the Oxidised Form (pdb code 2xod). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Flavoprotein Nrdi From Bacillus Anthracis in the Oxidised Form, PDB code: 2xod:

Zinc binding site 1 out of 1 in 2xod

Go back to Zinc Binding Sites List in 2xod
Zinc binding site 1 out of 1 in the Crystal Structure of Flavoprotein Nrdi From Bacillus Anthracis in the Oxidised Form


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Flavoprotein Nrdi From Bacillus Anthracis in the Oxidised Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1120

b:9.5
occ:1.00
NE2 A:HIS17 2.0 9.4 1.0
O1 A:CAC1121 2.0 10.8 0.8
O A:HOH2191 2.1 11.7 1.0
CE1 A:HIS17 2.8 9.5 1.0
CD2 A:HIS17 3.1 8.8 1.0
AS A:CAC1121 3.3 12.0 0.8
O2 A:CAC1121 3.5 21.6 0.8
O A:HOH2155 3.9 28.0 1.0
C2 A:CAC1121 3.9 39.9 0.8
ND1 A:HIS17 4.0 9.7 1.0
CG A:HIS17 4.2 8.3 1.0
CE A:LYS13 4.5 14.6 1.0
C1 A:CAC1121 4.7 9.9 0.8
O A:HOH2009 4.9 49.2 1.0

Reference:

R.Johansson, E.Torrents, D.Lundin, J.Sprenger, M.Sahlin, B.M.Sjoberg, D.T.Logan. High Resolution Crystal Structures of Nrdi in the Oxidised and Reduced States: An Unusual Flavodoxin Febs J. V. 277 4265 2010.
ISSN: ISSN 1742-464X
PubMed: 20831589
DOI: 10.1111/J.1742-4658.2010.07815.X
Page generated: Wed Dec 16 04:00:13 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy