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Zinc in PDB 2xf4: Crystal Structure of Salmonella Enterica Serovar Typhimurium Ycbl

Protein crystallography data

The structure of Crystal Structure of Salmonella Enterica Serovar Typhimurium Ycbl, PDB code: 2xf4 was solved by A.Stamp, P.Owen, K.El Omari, C.Nichols, M.Lockyer, H.Lamb, I.Charles, A.R.Hawkins, D.K.Stammers, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.30
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 124.363, 124.363, 35.594, 90.00, 90.00, 90.00
R / Rfree (%) 19.29 / 22.896

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Salmonella Enterica Serovar Typhimurium Ycbl (pdb code 2xf4). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Crystal Structure of Salmonella Enterica Serovar Typhimurium Ycbl, PDB code: 2xf4:

Zinc binding site 1 out of 1 in 2xf4

Go back to Zinc Binding Sites List in 2xf4
Zinc binding site 1 out of 1 in the Crystal Structure of Salmonella Enterica Serovar Typhimurium Ycbl


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Salmonella Enterica Serovar Typhimurium Ycbl within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1211

b:19.9
occ:1.00
OD2 A:ASP151 2.1 17.4 1.0
NE2 A:HIS61 2.1 15.3 1.0
NE2 A:HIS192 2.1 16.3 1.0
O A:HOH2097 2.1 44.9 1.0
OD1 A:ASP60 2.4 17.2 1.0
CG A:ASP151 3.0 17.2 1.0
CD2 A:HIS61 3.0 14.8 1.0
CD2 A:HIS192 3.0 17.5 1.0
CE1 A:HIS192 3.2 17.7 1.0
CE1 A:HIS61 3.2 15.5 1.0
OD1 A:ASP151 3.2 16.6 1.0
CG A:ASP60 3.3 17.3 1.0
OD2 A:ASP60 3.6 16.5 1.0
O A:HOH2056 3.7 4.8 1.0
O A:HOH2061 4.0 20.4 1.0
CG A:GLN13 4.2 17.8 1.0
CG A:HIS61 4.2 15.1 1.0
ND1 A:HIS61 4.2 14.9 1.0
CG A:HIS192 4.2 18.3 1.0
ND1 A:HIS192 4.2 17.7 1.0
CB A:ASP151 4.3 16.9 1.0
O A:HOH2098 4.4 43.4 1.0
NE2 A:HIS56 4.5 15.7 1.0
CE1 A:HIS56 4.6 15.9 1.0
CB A:ASP60 4.7 17.1 1.0
CB A:GLN13 5.0 19.6 1.0

Reference:

A.Stamp, P.Owen, K.El Omari, C.Nichols, M.Lockyer, H.Lamb, I.Charles, A.R.Hawkins, D.K.Stammers. Structural and Functional Characterization of Salmonella Enterica Serovar Typhimurium Ycbl: An Unusual Type II Glyoxalase Protein Sci. V. 19 1897 2010.
ISSN: ISSN 0961-8368
PubMed: 20669241
DOI: 10.1002/PRO.475
Page generated: Wed Dec 16 03:59:55 2020

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