Atomistry » Zinc » PDB 2wwo-2x8y » 2x3y
Atomistry »
  Zinc »
    PDB 2wwo-2x8y »
      2x3y »

Zinc in PDB 2x3y: Crystal Structure of Gmha From Burkholderia Pseudomallei

Protein crystallography data

The structure of Crystal Structure of Gmha From Burkholderia Pseudomallei, PDB code: 2x3y was solved by N.J.Harmer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.63 / 2.40
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 47.095, 69.091, 128.148, 98.35, 89.96, 104.19
R / Rfree (%) 18.9 / 24.5

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of Gmha From Burkholderia Pseudomallei (pdb code 2x3y). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 8 binding sites of Zinc where determined in the Crystal Structure of Gmha From Burkholderia Pseudomallei, PDB code: 2x3y:
Jump to Zinc binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Zinc binding site 1 out of 8 in 2x3y

Go back to Zinc Binding Sites List in 2x3y
Zinc binding site 1 out of 8 in the Crystal Structure of Gmha From Burkholderia Pseudomallei


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of Gmha From Burkholderia Pseudomallei within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1196

b:43.6
occ:0.78
OE2 A:GLU68 2.2 57.3 1.0
NE2 A:HIS183 2.3 29.6 1.0
NE2 A:HIS64 2.3 23.5 1.0
OE1 B:GLN175 2.3 25.1 1.0
CD A:GLU68 2.7 33.0 1.0
OE1 A:GLU68 2.7 49.0 1.0
CD2 A:HIS64 2.9 16.0 1.0
CD2 A:HIS183 3.0 12.9 1.0
CE1 A:HIS183 3.3 17.6 1.0
CD B:GLN175 3.4 34.6 1.0
CE1 A:HIS64 3.5 35.0 1.0
O A:HOH2043 3.7 46.5 1.0
NE2 B:GLN175 3.8 27.1 1.0
CG A:GLU68 4.1 28.4 1.0
CG A:HIS64 4.2 36.1 1.0
CG A:HIS183 4.2 19.8 1.0
ND1 A:HIS183 4.3 30.2 1.0
ND1 A:HIS64 4.4 27.2 1.0
CD1 A:LEU179 4.5 19.5 1.0
CG B:GLN175 4.6 16.8 1.0
CB B:GLN175 4.8 17.8 1.0
CA B:GLY57 4.9 17.4 1.0
CE2 A:PHE73 4.9 25.7 1.0
CA B:PRO172 4.9 20.3 1.0

Zinc binding site 2 out of 8 in 2x3y

Go back to Zinc Binding Sites List in 2x3y
Zinc binding site 2 out of 8 in the Crystal Structure of Gmha From Burkholderia Pseudomallei


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of Gmha From Burkholderia Pseudomallei within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1196

b:48.6
occ:1.00
OE2 B:GLU68 2.1 49.8 1.0
OE1 A:GLN175 2.2 29.5 1.0
NE2 B:HIS183 2.3 13.4 1.0
NE2 B:HIS64 2.3 29.4 1.0
CD B:GLU68 2.7 24.8 1.0
OE1 B:GLU68 2.8 48.0 1.0
CD2 B:HIS64 2.9 9.4 1.0
CD2 B:HIS183 3.0 10.4 1.0
CE1 B:HIS183 3.3 24.6 1.0
CD A:GLN175 3.3 25.6 1.0
CE1 B:HIS64 3.5 37.0 1.0
NE2 A:GLN175 3.8 20.5 1.0
CG B:GLU68 4.0 28.1 1.0
CG B:HIS183 4.2 23.2 1.0
CG B:HIS64 4.2 38.4 1.0
ND1 B:HIS183 4.3 35.6 1.0
ND1 B:HIS64 4.5 39.7 1.0
CG A:GLN175 4.6 18.2 1.0
CD1 B:LEU179 4.6 20.4 1.0
CB A:GLN175 4.7 14.3 1.0
CA A:GLY57 4.7 14.6 1.0
CA A:PRO172 4.7 25.0 1.0
CE2 B:PHE73 4.9 25.7 1.0

Zinc binding site 3 out of 8 in 2x3y

Go back to Zinc Binding Sites List in 2x3y
Zinc binding site 3 out of 8 in the Crystal Structure of Gmha From Burkholderia Pseudomallei


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of Gmha From Burkholderia Pseudomallei within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn1196

b:61.4
occ:0.91
OE2 C:GLU68 2.1 58.1 1.0
NE2 C:HIS64 2.2 33.6 1.0
OE1 D:GLN175 2.3 35.5 1.0
NE2 C:HIS183 2.5 32.7 1.0
CD C:GLU68 2.7 30.8 1.0
CD2 C:HIS64 2.8 13.8 1.0
OE1 C:GLU68 2.8 43.1 1.0
CD2 C:HIS183 3.2 21.2 1.0
CD D:GLN175 3.3 37.6 1.0
CE1 C:HIS64 3.4 32.8 1.0
CE1 C:HIS183 3.6 28.4 1.0
NE2 D:GLN175 3.7 26.6 1.0
CG C:GLU68 4.0 35.0 1.0
CG C:HIS64 4.1 31.6 1.0
ND1 C:HIS64 4.3 36.2 1.0
CG C:HIS183 4.5 25.9 1.0
ND1 C:HIS183 4.6 38.5 1.0
CA D:GLY57 4.6 20.6 1.0
CG D:GLN175 4.6 17.2 1.0
CD1 C:LEU179 4.6 25.1 1.0
CB D:GLN175 4.8 16.7 1.0

Zinc binding site 4 out of 8 in 2x3y

Go back to Zinc Binding Sites List in 2x3y
Zinc binding site 4 out of 8 in the Crystal Structure of Gmha From Burkholderia Pseudomallei


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of Gmha From Burkholderia Pseudomallei within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn1196

b:48.3
occ:0.93
OE2 D:GLU68 2.1 57.1 1.0
NE2 D:HIS183 2.3 20.0 1.0
NE2 D:HIS64 2.4 35.2 1.0
OE1 C:GLN175 2.4 29.6 1.0
CD D:GLU68 2.7 30.3 1.0
OE1 D:GLU68 2.8 47.7 1.0
CD2 D:HIS64 2.9 10.9 1.0
CD2 D:HIS183 3.0 13.3 1.0
CE1 D:HIS183 3.4 27.9 1.0
CD C:GLN175 3.5 31.8 1.0
CE1 D:HIS64 3.6 33.9 1.0
NE2 C:GLN175 3.9 16.4 1.0
CG D:GLU68 4.1 25.8 1.0
CG D:HIS183 4.2 29.6 1.0
CG D:HIS64 4.2 40.1 1.0
ND1 D:HIS183 4.3 35.3 1.0
ND1 D:HIS64 4.5 38.6 1.0
CD1 D:LEU179 4.6 28.3 1.0
CG C:GLN175 4.8 19.9 1.0
CE2 D:PHE73 4.9 21.3 1.0
CB C:GLN175 4.9 15.7 1.0
CA C:GLY57 4.9 14.1 1.0
CA C:PRO172 4.9 15.0 1.0

Zinc binding site 5 out of 8 in 2x3y

Go back to Zinc Binding Sites List in 2x3y
Zinc binding site 5 out of 8 in the Crystal Structure of Gmha From Burkholderia Pseudomallei


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 5 of Crystal Structure of Gmha From Burkholderia Pseudomallei within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Zn1196

b:42.4
occ:0.96
OE2 E:GLU68 2.1 58.7 1.0
OE1 F:GLN175 2.2 30.4 1.0
NE2 E:HIS183 2.3 20.8 1.0
NE2 E:HIS64 2.4 34.0 1.0
CD E:GLU68 2.8 38.0 1.0
OE1 E:GLU68 2.9 46.4 1.0
CD2 E:HIS183 3.1 9.2 1.0
CD2 E:HIS64 3.1 15.0 1.0
CD F:GLN175 3.2 33.5 1.0
CE1 E:HIS183 3.3 23.3 1.0
NE2 F:GLN175 3.6 23.6 1.0
CE1 E:HIS64 3.6 37.6 1.0
CG E:GLU68 4.1 32.1 1.0
CG E:HIS183 4.2 33.6 1.0
ND1 E:HIS183 4.3 41.0 1.0
CG E:HIS64 4.3 34.7 1.0
CG F:GLN175 4.5 22.6 1.0
ND1 E:HIS64 4.6 41.5 1.0
CB F:GLN175 4.7 14.1 1.0
CD1 E:LEU179 4.7 18.1 1.0
CA F:PRO172 4.8 13.4 1.0
CE2 E:PHE73 4.8 27.4 1.0
CA F:GLY57 4.9 14.3 1.0

Zinc binding site 6 out of 8 in 2x3y

Go back to Zinc Binding Sites List in 2x3y
Zinc binding site 6 out of 8 in the Crystal Structure of Gmha From Burkholderia Pseudomallei


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 6 of Crystal Structure of Gmha From Burkholderia Pseudomallei within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Zn1196

b:54.2
occ:0.83
OE2 F:GLU68 2.2 59.3 1.0
OE1 E:GLN175 2.2 35.2 1.0
NE2 F:HIS64 2.3 33.5 1.0
NE2 F:HIS183 2.4 16.4 1.0
CD F:GLU68 2.8 39.6 1.0
OE1 F:GLU68 2.9 49.2 1.0
CD2 F:HIS64 2.9 17.9 1.0
CD2 F:HIS183 3.2 15.3 1.0
CD E:GLN175 3.3 29.9 1.0
CE1 F:HIS183 3.4 29.0 1.0
CE1 F:HIS64 3.5 40.5 1.0
NE2 E:GLN175 3.7 28.9 1.0
CG F:GLU68 4.1 30.9 1.0
CG F:HIS64 4.2 30.5 1.0
CG F:HIS183 4.4 25.4 1.0
ND1 F:HIS183 4.4 35.6 1.0
ND1 F:HIS64 4.5 33.5 1.0
CG E:GLN175 4.5 22.1 1.0
CD1 F:LEU179 4.6 21.9 1.0
CB E:GLN175 4.7 17.9 1.0
CA E:GLY57 4.8 22.7 1.0
CA E:PRO172 4.9 25.4 1.0
CE2 F:PHE73 4.9 36.9 1.0

Zinc binding site 7 out of 8 in 2x3y

Go back to Zinc Binding Sites List in 2x3y
Zinc binding site 7 out of 8 in the Crystal Structure of Gmha From Burkholderia Pseudomallei


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 7 of Crystal Structure of Gmha From Burkholderia Pseudomallei within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Zn1196

b:57.6
occ:0.97
OE2 G:GLU68 2.0 56.2 1.0
OE1 H:GLN175 2.3 33.8 1.0
NE2 G:HIS183 2.3 21.2 1.0
NE2 G:HIS64 2.4 35.1 1.0
CD G:GLU68 2.6 26.1 1.0
OE1 G:GLU68 2.7 43.7 1.0
CD2 G:HIS64 3.0 12.5 1.0
CD2 G:HIS183 3.0 13.5 1.0
CD H:GLN175 3.3 31.3 1.0
CE1 G:HIS183 3.3 31.9 1.0
CE1 G:HIS64 3.7 41.7 1.0
NE2 H:GLN175 3.8 17.4 1.0
CG G:GLU68 4.0 27.2 1.0
CG G:HIS183 4.2 25.7 1.0
ND1 G:HIS183 4.3 39.0 1.0
CG G:HIS64 4.3 34.8 1.0
ND1 G:HIS64 4.6 41.2 1.0
CG H:GLN175 4.6 23.0 1.0
CA H:PRO172 4.7 21.7 1.0
CB H:GLN175 4.8 16.6 1.0
CD1 G:LEU179 4.8 25.1 1.0
CA H:GLY57 4.8 26.4 1.0
CE2 G:PHE73 4.8 30.8 1.0

Zinc binding site 8 out of 8 in 2x3y

Go back to Zinc Binding Sites List in 2x3y
Zinc binding site 8 out of 8 in the Crystal Structure of Gmha From Burkholderia Pseudomallei


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 8 of Crystal Structure of Gmha From Burkholderia Pseudomallei within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Zn1196

b:48.2
occ:0.85
OE2 H:GLU68 2.1 56.1 1.0
OE1 G:GLN175 2.3 21.1 1.0
NE2 H:HIS183 2.3 33.4 1.0
NE2 H:HIS64 2.4 33.1 1.0
CD H:GLU68 2.7 34.0 1.0
OE1 H:GLU68 2.8 42.2 1.0
CD2 H:HIS64 3.0 19.8 1.0
CD2 H:HIS183 3.1 17.7 1.0
CD G:GLN175 3.3 31.6 1.0
CE1 H:HIS183 3.3 22.5 1.0
CE1 H:HIS64 3.6 33.7 1.0
O H:HOH2025 3.6 48.6 1.0
NE2 G:GLN175 3.8 26.2 1.0
CG H:GLU68 4.1 32.7 1.0
CG H:HIS64 4.3 33.5 1.0
CG H:HIS183 4.3 23.5 1.0
ND1 H:HIS183 4.4 29.7 1.0
ND1 H:HIS64 4.5 31.8 1.0
CD1 H:LEU179 4.6 24.6 1.0
CG G:GLN175 4.6 23.2 1.0
CB G:GLN175 4.7 11.5 1.0
CA G:PRO172 4.8 18.6 1.0
CA G:GLY57 4.8 25.1 1.0
CE2 H:PHE73 4.9 35.5 1.0

Reference:

N.J.Harmer, N.J.Harmer. N/A N/A.
ISSN: ISSN 0022-2836
PubMed: 20447408
DOI: 10.1016/J.JMB.2010.04.058
Page generated: Wed Dec 16 03:59:03 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy