Zinc in PDB 2w0m: Crystal Structure of SSO2452 From Sulfolobus Solfataricus P2

The structure of Crystal Structure of SSO2452 From Sulfolobus Solfataricus P2, PDB code: 2w0m was solved by A.Mcrobbie, L.Carter, K.A.Johnson, M.Kerou, H.Liu, S.Mcmahon, M.Oke, J.H.Naismith, M.F.White, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.51 / 2.00
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	41.105, 169.596, 39.428, 90.00, 90.00, 90.00
R / Rfree (%)	20 / 25

The binding sites of Zinc atom in the Crystal Structure of SSO2452 From Sulfolobus Solfataricus P2 (pdb code 2w0m). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of SSO2452 From Sulfolobus Solfataricus P2, PDB code: 2w0m:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in the Crystal Structure of SSO2452 From Sulfolobus Solfataricus P2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of SSO2452 From Sulfolobus Solfataricus P2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1236 b:32.6 occ:1.00 O A:HOH2095 2.0 30.2 1.0 NE2 A:HIS212 2.1 28.3 1.0 O A:HOH2094 2.4 36.3 1.0 CD2 A:HIS212 3.0 30.6 1.0 CE1 A:HIS212 3.1 29.8 1.0 CG A:HIS212 4.1 31.3 1.0 ND1 A:HIS212 4.2 30.5 1.0 O A:GLU205 4.3 31.6 1.0 N A:MET207 4.4 32.3 1.0 CA A:LYS206 4.4 32.5 1.0 NZ A:LYS214 4.6 38.6 1.0 C A:LYS206 4.9 32.2 1.0 C A:GLU205 5.0 32.1 1.0 CE A:LYS214 5.0 37.1 1.0

Zinc binding site 2 out of 4 in the Crystal Structure of SSO2452 From Sulfolobus Solfataricus P2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of SSO2452 From Sulfolobus Solfataricus P2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1237 b:46.1 occ:1.00 ND1 A:HIS199 2.0 29.2 1.0 OE2 A:GLU218 2.0 35.9 1.0 O A:HOH2096 2.4 42.6 1.0 CD A:GLU218 2.8 35.5 1.0 CE1 A:HIS199 2.9 29.6 1.0 OE1 A:GLU218 2.9 37.9 1.0 O A:HOH2080 3.1 38.9 1.0 CG A:HIS199 3.1 29.4 1.0 CB A:HIS199 3.6 29.7 1.0 NE2 A:HIS199 4.0 29.8 1.0 CD2 A:HIS199 4.2 29.1 1.0 CG A:GLU218 4.2 34.8 1.0 O A:HOH2087 4.3 29.4 1.0 CA A:HIS199 4.3 29.9 1.0 OH A:TYR201 4.7 29.9 1.0 O A:LEU198 4.8 30.4 1.0 OE1 A:GLU197 5.0 27.7 1.0

Zinc binding site 3 out of 4 in the Crystal Structure of SSO2452 From Sulfolobus Solfataricus P2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of SSO2452 From Sulfolobus Solfataricus P2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1238 b:87.2 occ:1.00 OD1 A:ASP64 2.5 36.9 1.0 CG A:ASP64 3.3 36.5 1.0 OD2 A:ASP64 3.5 39.0 1.0 O A:HOH2031 3.8 46.5 1.0 CD A:ARG63 3.9 38.5 1.0 O A:HOH2029 4.0 40.5 1.0 NH1 A:ARG63 4.2 40.6 1.0 CG A:ARG63 4.3 37.2 1.0 CB A:ASP64 4.6 35.8 1.0 CB A:ARG63 4.6 36.9 1.0 N A:ASP64 4.6 35.7 1.0 CA A:ASP64 4.8 35.5 1.0 NE A:ARG63 4.9 39.2 1.0

Zinc binding site 4 out of 4 in the Crystal Structure of SSO2452 From Sulfolobus Solfataricus P2


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of SSO2452 From Sulfolobus Solfataricus P2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn1239 b:41.5 occ:1.00 OE1 A:GLU234 2.0 46.1 1.0 NE2 A:HIS215 2.2 34.2 1.0 O A:HOH2097 2.6 52.4 1.0 CD A:GLU234 2.8 46.0 1.0 OE2 A:GLU234 2.8 46.2 1.0 CD2 A:HIS215 3.0 34.0 1.0 CE1 A:HIS215 3.2 34.2 1.0 CG A:HIS215 4.2 33.0 1.0 CG A:GLU234 4.2 46.0 1.0 ND1 A:HIS215 4.3 33.6 1.0 NH1 A:ARG232 4.5 48.1 1.0 CZ A:ARG232 4.6 47.8 1.0 NE A:ARG232 4.7 45.7 1.0 CA A:GLU234 4.7 46.0 1.0 CB A:GLU234 4.7 46.0 1.0

A.M.Mcrobbie, L.G.Carter, M.Kerou, H.Liu, S.A.Mcmahon, K.A.Johnson, M.Oke, J.H.Naismith, M.F.White. Structural and Functional Characterisation of A Conserved Archaeal Rada Paralog with Antirecombinase Activity. J.Mol.Biol. V. 389 661 2009.
ISSN: ISSN 0022-2836
PubMed: 19414020
DOI: 10.1016/J.JMB.2009.04.060