Zinc in PDB 2vwh: Haloferax Mediterranei Glucose Dehydrogenase in Complex with Nadp, Zn and Glucose.

All present enzymatic activity of Haloferax Mediterranei Glucose Dehydrogenase in Complex with Nadp, Zn and Glucose.:
1.1.1.47;

The structure of Haloferax Mediterranei Glucose Dehydrogenase in Complex with Nadp, Zn and Glucose., PDB code: 2vwh was solved by P.J.Baker, K.L.Britton, M.Fisher, J.Esclapez, C.Pire, M.J.Bonete, J.Ferrer, D.W.Rice, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	14.87 / 2.03
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	61.492, 112.703, 151.452, 90.00, 90.00, 90.00
R / Rfree (%)	13.4 / 15.9

The binding sites of Zinc atom in the Haloferax Mediterranei Glucose Dehydrogenase in Complex with Nadp, Zn and Glucose. (pdb code 2vwh). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total only one binding site of Zinc was determined in the Haloferax Mediterranei Glucose Dehydrogenase in Complex with Nadp, Zn and Glucose., PDB code: 2vwh:

Zinc binding site 1 out of 1 in the Haloferax Mediterranei Glucose Dehydrogenase in Complex with Nadp, Zn and Glucose.


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Haloferax Mediterranei Glucose Dehydrogenase in Complex with Nadp, Zn and Glucose. within 5.0Å range: probe atom residue distance (Å) B Occ A:Zn800 b:27.9 occ:0.80 O A:HOH2148 1.9 27.1 1.0 NE2 A:HIS63 2.0 22.1 1.0 O1 A:BGC600 2.0 29.8 1.0 OD2 A:ASP38 2.0 29.1 1.0 O2 A:BGC600 2.5 21.2 1.0 CE1 A:HIS63 2.9 23.4 1.0 CG A:ASP38 3.0 26.9 1.0 CD2 A:HIS63 3.0 20.9 1.0 C1 A:BGC600 3.0 27.9 1.0 C2 A:BGC600 3.1 25.5 1.0 OD1 A:ASP38 3.4 27.9 1.0 OE2 A:GLU64 3.7 27.9 1.0 C5N A:NAP500 3.7 26.2 1.0 OE1 A:GLU150 3.7 21.9 1.0 ND1 A:HIS63 4.1 20.1 1.0 CG A:HIS63 4.1 23.6 1.0 CB A:ASP38 4.2 21.7 1.0 OE2 A:GLU150 4.2 23.5 1.0 O A:HOH2142 4.3 30.9 1.0 CG A:GLU64 4.3 18.4 1.0 O5 A:BGC600 4.3 30.4 1.0 C4N A:NAP500 4.3 21.5 1.0 CD A:GLU64 4.3 22.0 1.0 CD A:GLU150 4.3 24.1 1.0 C6N A:NAP500 4.5 24.2 1.0 OG1 A:THR40 4.5 28.9 1.0 C3 A:BGC600 4.6 30.0 1.0 CB A:THR40 4.6 26.8 1.0

P.J.Baker, K.L.Britton, M.Fisher, J.Esclapez, C.Pire, M.J.Bonete, J.Ferrer, D.W.Rice. Active Site Dynamics in the Zinc-Dependent Medium Chain Alcohol Dehydrogenase Superfamily. Proc. Natl. Acad. Sci. V. 106 779 2009U.S.A..
ISSN: ESSN 1091-6490
PubMed: 19131516
DOI: 10.1073/PNAS.0807529106