Zinc in PDB 2rpp: Solution Structure of Tandem Zinc Finger Domain 12 in Muscleblind-Like Protein 2
Zinc Binding Sites:
The binding sites of Zinc atom in the Solution Structure of Tandem Zinc Finger Domain 12 in Muscleblind-Like Protein 2
(pdb code 2rpp). This binding sites where shown within
5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the
Solution Structure of Tandem Zinc Finger Domain 12 in Muscleblind-Like Protein 2, PDB code: 2rpp:
Jump to Zinc binding site number:
1;
2;
Zinc binding site 1 out
of 2 in 2rpp
Go back to
Zinc Binding Sites List in 2rpp
Zinc binding site 1 out
of 2 in the Solution Structure of Tandem Zinc Finger Domain 12 in Muscleblind-Like Protein 2
 Mono view
 Stereo pair view
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A full contact list of Zinc with other atoms in the Zn binding
site number 1 of Solution Structure of Tandem Zinc Finger Domain 12 in Muscleblind-Like Protein 2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn201
b:0.0
occ:1.00
|
SG
|
A:CYS34
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS26
|
2.3
|
0.0
|
1.0
|
NE2
|
A:HIS45
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS41
|
2.4
|
0.0
|
1.0
|
HE1
|
A:HIS45
|
2.6
|
0.0
|
1.0
|
CE1
|
A:HIS45
|
2.7
|
0.0
|
1.0
|
HB2
|
A:CYS26
|
3.2
|
0.0
|
1.0
|
CB
|
A:CYS26
|
3.2
|
0.0
|
1.0
|
HB2
|
A:PHE43
|
3.4
|
0.0
|
1.0
|
HB2
|
A:CYS34
|
3.4
|
0.0
|
1.0
|
CB
|
A:CYS41
|
3.4
|
0.0
|
1.0
|
HB3
|
A:CYS26
|
3.4
|
0.0
|
1.0
|
HB3
|
A:CYS41
|
3.4
|
0.0
|
1.0
|
HB2
|
A:CYS41
|
3.5
|
0.0
|
1.0
|
CD2
|
A:HIS45
|
3.5
|
0.0
|
1.0
|
CB
|
A:CYS34
|
3.5
|
0.0
|
1.0
|
HB2
|
A:PHE29
|
3.5
|
0.0
|
1.0
|
HB2
|
A:ARG36
|
3.8
|
0.0
|
1.0
|
H
|
A:PHE29
|
3.9
|
0.0
|
1.0
|
ND1
|
A:HIS45
|
3.9
|
0.0
|
1.0
|
HB3
|
A:CYS34
|
3.9
|
0.0
|
1.0
|
HB2
|
A:GLN28
|
3.9
|
0.0
|
1.0
|
HD2
|
A:PHE43
|
3.9
|
0.0
|
1.0
|
HD2
|
A:HIS45
|
4.0
|
0.0
|
1.0
|
CG
|
A:HIS45
|
4.3
|
0.0
|
1.0
|
CB
|
A:PHE43
|
4.4
|
0.0
|
1.0
|
CB
|
A:PHE29
|
4.5
|
0.0
|
1.0
|
O
|
A:ARG36
|
4.6
|
0.0
|
1.0
|
N
|
A:PHE29
|
4.6
|
0.0
|
1.0
|
HB3
|
A:PHE29
|
4.6
|
0.0
|
1.0
|
HD1
|
A:HIS45
|
4.6
|
0.0
|
1.0
|
CA
|
A:CYS26
|
4.7
|
0.0
|
1.0
|
CD2
|
A:PHE43
|
4.7
|
0.0
|
1.0
|
HB3
|
A:PHE43
|
4.7
|
0.0
|
1.0
|
CA
|
A:CYS34
|
4.8
|
0.0
|
1.0
|
CA
|
A:CYS41
|
4.8
|
0.0
|
1.0
|
H
|
A:ARG36
|
4.9
|
0.0
|
1.0
|
CB
|
A:ARG36
|
4.9
|
0.0
|
1.0
|
HA
|
A:CYS34
|
4.9
|
0.0
|
1.0
|
HA
|
A:CYS26
|
4.9
|
0.0
|
1.0
|
HA
|
A:PHE29
|
5.0
|
0.0
|
1.0
|
H
|
A:PHE43
|
5.0
|
0.0
|
1.0
|
CA
|
A:PHE29
|
5.0
|
0.0
|
1.0
|
CG
|
A:PHE43
|
5.0
|
0.0
|
1.0
|
|
Zinc binding site 2 out
of 2 in 2rpp
Go back to
Zinc Binding Sites List in 2rpp
Zinc binding site 2 out
of 2 in the Solution Structure of Tandem Zinc Finger Domain 12 in Muscleblind-Like Protein 2
 Mono view
 Stereo pair view
|
A full contact list of Zinc with other atoms in the Zn binding
site number 2 of Solution Structure of Tandem Zinc Finger Domain 12 in Muscleblind-Like Protein 2 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Zn401
b:0.0
occ:1.00
|
NE2
|
A:HIS77
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS73
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS68
|
2.3
|
0.0
|
1.0
|
SG
|
A:CYS60
|
2.3
|
0.0
|
1.0
|
HE1
|
A:HIS77
|
2.7
|
0.0
|
1.0
|
CE1
|
A:HIS77
|
2.7
|
0.0
|
1.0
|
HB2
|
A:CYS60
|
3.2
|
0.0
|
1.0
|
HB2
|
A:CYS68
|
3.2
|
0.0
|
1.0
|
CB
|
A:CYS60
|
3.3
|
0.0
|
1.0
|
HB2
|
A:CYS73
|
3.3
|
0.0
|
1.0
|
HB3
|
A:SER63
|
3.4
|
0.0
|
1.0
|
CB
|
A:CYS73
|
3.4
|
0.0
|
1.0
|
CD2
|
A:HIS77
|
3.4
|
0.0
|
1.0
|
CB
|
A:CYS68
|
3.4
|
0.0
|
1.0
|
HB3
|
A:CYS60
|
3.5
|
0.0
|
1.0
|
HB2
|
A:ARG70
|
3.5
|
0.0
|
1.0
|
HB3
|
A:CYS73
|
3.6
|
0.0
|
1.0
|
ND1
|
A:HIS77
|
3.8
|
0.0
|
1.0
|
H
|
A:SER63
|
3.8
|
0.0
|
1.0
|
HB3
|
A:CYS68
|
3.8
|
0.0
|
1.0
|
HD2
|
A:HIS77
|
4.0
|
0.0
|
1.0
|
HB2
|
A:ASP62
|
4.1
|
0.0
|
1.0
|
HD2
|
A:ARG70
|
4.1
|
0.0
|
1.0
|
CG
|
A:HIS77
|
4.2
|
0.0
|
1.0
|
O
|
A:TYR75
|
4.3
|
0.0
|
1.0
|
CB
|
A:SER63
|
4.4
|
0.0
|
1.0
|
HB2
|
A:TYR75
|
4.4
|
0.0
|
1.0
|
HD3
|
A:ARG70
|
4.5
|
0.0
|
1.0
|
HD1
|
A:HIS77
|
4.5
|
0.0
|
1.0
|
N
|
A:SER63
|
4.5
|
0.0
|
1.0
|
CB
|
A:ARG70
|
4.6
|
0.0
|
1.0
|
HD2
|
A:TYR75
|
4.7
|
0.0
|
1.0
|
CA
|
A:CYS60
|
4.7
|
0.0
|
1.0
|
CA
|
A:CYS68
|
4.7
|
0.0
|
1.0
|
CD
|
A:ARG70
|
4.8
|
0.0
|
1.0
|
HA
|
A:CYS68
|
4.8
|
0.0
|
1.0
|
HB3
|
A:ARG70
|
4.8
|
0.0
|
1.0
|
CA
|
A:CYS73
|
4.8
|
0.0
|
1.0
|
HA
|
A:SER63
|
4.9
|
0.0
|
1.0
|
HA
|
A:CYS60
|
4.9
|
0.0
|
1.0
|
H
|
A:SER69
|
4.9
|
0.0
|
1.0
|
CA
|
A:SER63
|
4.9
|
0.0
|
1.0
|
HA
|
A:CYS73
|
4.9
|
0.0
|
1.0
|
H
|
A:ARG70
|
5.0
|
0.0
|
1.0
|
|
Reference:
F.He,
W.Dang,
C.Abe,
K.Tsuda,
M.Inoue,
S.Watanabe,
N.Kobayashi,
T.Kigawa,
T.Matsuda,
T.Yabuki,
M.Aoki,
E.Seki,
T.Harada,
Y.Tomabechi,
T.Terada,
M.Shirouzu,
A.Tanaka,
P.Guntert,
Y.Muto,
S.Yokoyama.
Solution Structure of the Rna Binding Domain in the Human Muscleblind-Like Protein 2 Protein Sci. V. 18 80 2009.
ISSN: ISSN 0961-8368
PubMed: 19177353
DOI: 10.1002/PRO.17
Page generated: Thu Oct 17 03:51:40 2024
|