Atomistry » Zinc » PDB 2ovy-2p9x » 2p9x
Atomistry »
  Zinc »
    PDB 2ovy-2p9x »
      2p9x »

Zinc in PDB 2p9x: Crystal Structure of PH0832 From Pyrococcus Horikoshii OT3

Protein crystallography data

The structure of Crystal Structure of PH0832 From Pyrococcus Horikoshii OT3, PDB code: 2p9x was solved by M.Sugahara, N.Kunishima, Riken Structural Genomics/Proteomicsinitiative (Rsgi), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.97 / 1.65
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 62.357, 65.870, 104.050, 90.00, 90.00, 90.00
R / Rfree (%) 21.9 / 24.5

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of PH0832 From Pyrococcus Horikoshii OT3 (pdb code 2p9x). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 4 binding sites of Zinc where determined in the Crystal Structure of PH0832 From Pyrococcus Horikoshii OT3, PDB code: 2p9x:
Jump to Zinc binding site number: 1; 2; 3; 4;

Zinc binding site 1 out of 4 in 2p9x

Go back to Zinc Binding Sites List in 2p9x
Zinc binding site 1 out of 4 in the Crystal Structure of PH0832 From Pyrococcus Horikoshii OT3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of PH0832 From Pyrococcus Horikoshii OT3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn2001

b:22.1
occ:1.00
OXT A:ACT1001 2.0 21.8 1.0
N A:SER2 2.1 23.3 1.0
C A:ACT1001 2.8 22.4 1.0
O A:ACT1001 2.9 23.5 1.0
CA A:SER2 3.0 22.8 1.0
O A:SER2 3.3 22.8 1.0
C A:SER2 3.4 23.6 1.0
O A:HOH2086 4.1 23.9 1.0
CH3 A:ACT1001 4.2 23.0 1.0
CB A:SER2 4.4 23.5 1.0
N A:LYS3 4.5 24.3 1.0
OG A:SER2 4.9 24.3 1.0
CB A:ASP6 5.0 26.4 1.0

Zinc binding site 2 out of 4 in 2p9x

Go back to Zinc Binding Sites List in 2p9x
Zinc binding site 2 out of 4 in the Crystal Structure of PH0832 From Pyrococcus Horikoshii OT3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of PH0832 From Pyrococcus Horikoshii OT3 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn2002

b:24.2
occ:1.00
OXT C:ACT1002 2.0 22.5 1.0
N C:SER2 2.1 25.1 1.0
C C:ACT1002 2.7 23.9 1.0
O C:ACT1002 2.8 24.2 1.0
CA C:SER2 3.0 25.8 1.0
O C:SER2 3.4 25.4 1.0
C C:SER2 3.5 26.6 1.0
CH3 C:ACT1002 4.2 23.7 1.0
CB C:SER2 4.4 26.6 1.0
N C:LYS3 4.6 26.9 1.0
OG C:SER2 4.9 27.0 1.0

Zinc binding site 3 out of 4 in 2p9x

Go back to Zinc Binding Sites List in 2p9x
Zinc binding site 3 out of 4 in the Crystal Structure of PH0832 From Pyrococcus Horikoshii OT3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 3 of Crystal Structure of PH0832 From Pyrococcus Horikoshii OT3 within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Zn2004

b:87.6
occ:1.00
OE2 C:GLU18 2.2 32.9 1.0
OE1 C:GLU18 2.8 31.2 1.0
O C:HOH2066 2.8 44.9 1.0
CD C:GLU18 2.8 29.6 1.0
NZ C:LYS72 3.1 40.1 1.0
CE C:LYS72 3.5 40.1 1.0
O B:HOH150 3.5 46.5 1.0
CG C:GLU18 4.3 26.4 1.0
CE B:MET67 4.4 26.3 1.0
O C:HOH2019 4.5 38.7 1.0
CD C:LYS72 5.0 38.8 1.0

Zinc binding site 4 out of 4 in 2p9x

Go back to Zinc Binding Sites List in 2p9x
Zinc binding site 4 out of 4 in the Crystal Structure of PH0832 From Pyrococcus Horikoshii OT3


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 4 of Crystal Structure of PH0832 From Pyrococcus Horikoshii OT3 within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Zn2003

b:32.1
occ:1.00
OE2 D:GLU24 2.2 30.2 1.0
OE2 D:GLU28 2.2 29.6 1.0
OE1 D:GLU28 2.5 29.9 1.0
CD D:GLU28 2.6 28.9 1.0
CD D:GLU24 3.2 31.2 1.0
O D:HOH2004 3.2 27.8 1.0
CG D:GLU24 3.6 28.1 1.0
O D:HOH2082 3.9 44.3 1.0
CG D:GLU28 4.1 28.2 1.0
O D:HOH2089 4.1 40.2 1.0
O D:HOH2037 4.2 34.4 1.0
OE1 D:GLU24 4.3 30.0 1.0
CD1 D:ILE13 4.5 34.0 1.0
O D:HOH2076 4.5 48.6 1.0
O D:HOH2066 4.9 48.2 1.0
O D:HOH2062 4.9 42.8 1.0

Reference:

M.Sugahara, N.Kunishima. Crystal Structure of PH0832 From Pyrococcus Horikoshii OT3 To Be Published.
Page generated: Wed Dec 16 03:47:51 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy