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Zinc in PDB 2osb: Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (Q16L/Q199R/)

Enzymatic activity of Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (Q16L/Q199R/)

All present enzymatic activity of Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (Q16L/Q199R/):
2.7.4.3;

Protein crystallography data

The structure of Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (Q16L/Q199R/), PDB code: 2osb was solved by J.Myers, R.Counago, C.J.Wilson, G.Wu, Y.Shamoo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 34.578, 74.317, 77.418, 90.00, 100.21, 90.00
R / Rfree (%) 24.5 / 26.4

Other elements in 2osb:

The structure of Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (Q16L/Q199R/) also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Zinc Binding Sites:

The binding sites of Zinc atom in the Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (Q16L/Q199R/) (pdb code 2osb). This binding sites where shown within 5.0 Angstroms radius around Zinc atom.
In total 2 binding sites of Zinc where determined in the Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (Q16L/Q199R/), PDB code: 2osb:
Jump to Zinc binding site number: 1; 2;

Zinc binding site 1 out of 2 in 2osb

Go back to Zinc Binding Sites List in 2osb
Zinc binding site 1 out of 2 in the Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (Q16L/Q199R/)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 1 of Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (Q16L/Q199R/) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Zn1220

b:27.8
occ:1.00
OD2 A:ASP153 2.2 15.6 1.0
SG A:CYS130 2.3 20.8 1.0
SG A:CYS150 2.4 20.2 1.0
SG A:CYS133 2.4 22.8 1.0
OD1 A:ASP153 2.7 19.5 1.0
CG A:ASP153 2.8 17.2 1.0
CB A:CYS130 3.1 21.1 1.0
CB A:CYS150 3.1 17.2 1.0
CB A:CYS133 3.4 23.0 1.0
N A:CYS133 3.6 22.2 1.0
CA A:CYS133 4.1 23.0 1.0
CB A:VAL132 4.2 23.3 1.0
CG2 A:THR135 4.2 24.9 1.0
CB A:ASP153 4.2 21.0 1.0
O A:HOH1267 4.4 31.0 1.0
N A:ASP153 4.4 24.7 1.0
C A:VAL132 4.5 22.8 1.0
CA A:CYS130 4.5 17.8 1.0
CA A:CYS150 4.6 18.8 1.0
CG1 A:VAL132 4.6 23.7 1.0
CB A:LYS152 4.7 27.6 1.0
CA A:VAL132 4.7 23.4 1.0
N A:VAL132 4.8 21.4 1.0
C A:CYS133 4.8 23.0 1.0
N A:GLY134 4.8 24.0 1.0
CA A:ASP153 4.9 23.6 1.0

Zinc binding site 2 out of 2 in 2osb

Go back to Zinc Binding Sites List in 2osb
Zinc binding site 2 out of 2 in the Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (Q16L/Q199R/)


Mono view


Stereo pair view

A full contact list of Zinc with other atoms in the Zn binding site number 2 of Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (Q16L/Q199R/) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Zn1221

b:37.6
occ:1.00
SG B:CYS130 2.3 30.0 1.0
OD2 B:ASP153 2.4 36.2 1.0
SG B:CYS150 2.4 29.1 1.0
SG B:CYS133 2.6 35.5 1.0
OD1 B:ASP153 2.8 37.9 1.0
CG B:ASP153 2.9 36.7 1.0
CB B:CYS150 3.2 28.4 1.0
CB B:CYS130 3.2 30.2 1.0
N B:CYS133 3.6 33.8 1.0
CB B:CYS133 3.6 34.9 1.0
CB B:VAL132 4.1 34.7 1.0
CA B:CYS133 4.2 33.3 1.0
CG2 B:THR135 4.2 31.9 1.0
N B:ASP153 4.3 37.8 1.0
CB B:LYS152 4.3 36.3 1.0
CB B:ASP153 4.3 37.1 1.0
O B:HOH1284 4.6 42.7 1.0
CG1 B:VAL132 4.6 34.6 1.0
C B:VAL132 4.6 34.3 1.0
CA B:CYS130 4.7 29.6 1.0
CA B:CYS150 4.7 30.4 1.0
CD B:LYS152 4.7 39.3 1.0
CA B:VAL132 4.7 34.1 1.0
N B:GLY134 4.8 32.6 1.0
N B:VAL132 4.8 33.5 1.0
CA B:ASP153 4.9 37.2 1.0
C B:CYS133 4.9 33.0 1.0

Reference:

R.Counago, C.J.Wilson, J.Myers, G.Wu, Y.Shamoo, P.Wittung-Stafshede. Crystal Structure of A Thermostable Mutant of Bacillus Subtilis Adenylate Kinase (Q16L/Q199R/) To Be Published.
Page generated: Wed Dec 16 03:46:43 2020

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